Leifsonia shinshuensis: F1C12_19315
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Entry
F1C12_19315 CDS
T06806
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lse
Leifsonia shinshuensis
Pathway
lse03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lse00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F1C12_19315 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lse03021
]
F1C12_19315 (rpoC)
03400 DNA repair and recombination proteins [BR:
lse03400
]
F1C12_19315 (rpoC)
Enzymes [BR:
lse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F1C12_19315 (rpoC)
Transcription machinery [BR:
lse03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F1C12_19315 (rpoC)
DNA repair and recombination proteins [BR:
lse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F1C12_19315 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ADIP
Motif
Other DBs
NCBI-ProteinID:
QNE37048
UniProt:
A0A7G6YEY3
LinkDB
All DBs
Position
3990107..3993982
Genome browser
AA seq
1291 aa
AA seq
DB search
MLDATTFDELRIGLATADDIRRWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVIEVDEDGRHADLPGLENELRLEIKTLSDQRDARVADRLQRLETD
LAALEEEGAKADQKRRVKDTSEKEMGQIRKSYDEDIARLERVWESFRTLKVGDLKPEDAD
FNELVDRYGLYFEAFMGAEAIKRRLQAFDLSAEAELLREQIANGKGQKKIRAIKRLRVVS
SFLATGNSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKAAKRMVERSR
PQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPSQDMIIGLHHLTTVREGAVGEGR
AFSSVSEAILAKDQGTLHLNAKVKIRLDDYVPSDAADTGAQPITAIVETTLGRALFNEAL
PADYPYVEEVADKGQISSIVNALAERYPKVEVAAALDRIKDAGFYWGTRSGVTVSLSDIL
TPPNKAQIVAGYEKKAAKITAEFEKGLTTDLERRQELVKIWTEATNEVAEAMRANFPVDN
TINRMVTSGARGNWLQVRNIAGMRGLVNNPKGEIIPRPIISSYREGLSVAEYFIATHGAR
KGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTTKGLDLPIATVDAEGVLTRDPNVE
NSVFARTLAADAVGSNGDVVAKAGEDVGDVLIDKLVAAGVQDIKVRSVLTCESAVGVCAA
CYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVQELF
EARTPKGASPIAEAAGRIVIEETDKSRKVILTPDNGDEPHVYPVLKRSTLLVEDGQHVEL
GQQLIVGTVDPKEVLRVKGVREVQKHLVGGVQGVYRSQGVPIHDKHIEVIVRQMLRKVTV
VDHGDTDLLPGELVDRSRYNEINRAALTEGKKTASARQEVMGITKASLATESWLSAASFQ
ETTRVLTQAAMEGKSDPLIGLKENVIIGKLIPAGTGLSRYRNVSVEATEEAKAERYPNRI
FADDSAFSENDLSFVDFDSFSSDDYTPGTYN
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgcaacaactttcgatgagctgcgtatcggcctggccactgctgacgacatc
cgtcgctggagctacggcgaggtcaagaagcccgagacgatcaactaccgcacgctgaag
cccgagaaggacggcctgttcggagagcagatcttcggcccgtcccgcgactgggagtgc
tcgtgcggcaagtacaagcgcgtccggttcaagggcatcgtgtgcgagcgctgcggcgtg
gaggttaccaagtcctccgtccgccgcgagcgcatgggccacatcgagctcgccgcgcct
gtcacgcacatctggtacttcaagggtgtgcccagccgcctcggctacctgctcgacatg
gcgccgaaggacctcgagaaggtcatctatttcgccgcctacatggtgatcgaggtggac
gaggacggccgtcacgccgatctccccggcctcgagaacgagctgcgcctggagatcaag
acgctgtccgaccagcgcgacgcccgcgtcgccgaccgtctgcagcgcctggagaccgat
ctcgccgccctcgaggaggaaggtgccaaggccgaccagaagcgtcgcgtcaaggacacc
tccgagaaggagatgggccagatccgcaagtcctacgacgaggacatcgcccgcctcgag
cgcgtgtgggagtcgttccgcaccctcaaggtcggcgacctcaagccggaggacgcggac
ttcaacgagctcgtggaccgctacggcctgtacttcgaggcgttcatgggcgccgaggcg
atcaagcgccgcctgcaggcgttcgacctgagcgcagaggccgagctgctccgcgagcag
atcgccaacggcaagggccagaagaagatccgcgccatcaagcgcctgcgcgtggtgtcg
tcgttcctggcgaccggcaactcgccggccgcgatggtcctggacgtcgtcccggtcatc
ccgccggagctgcgcccgatggtccagctcgacggcggccgcttcgcgacctccgacctg
aacgacctgtaccgccgtgtgatcaaccgcaacaaccgtctccgccgcctgctcgacctc
ggcgcccccgagatcatcgtgaacaacgagaagcgcatgctccaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccgcccggtcacgggcaccggcaaccgcgcgctcaag
tccctcagcgacatgctgaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtggactactcgggccgttcggtcatcatcgtgggtccgcagctcaagctgcaccag
tgcggtctgcccaagcagatggcgctggagctgttcaagccgttcgtgatcaagcgcctg
atcgacctgagccacgctcagaacatcaaggccgccaagcgcatggtggagcgttcgcgc
ccgcaggtctgggacgtcctcgaggagatcatccgcgagcgccccgtcctcctgaaccgc
gctcccaccctgcaccgtctcggcatccaggccttcgagccgcagctcgtcgagggcaag
gccatccagctccacccgctggtgtgcgccgccttcaacgcggacttcgacggcgaccag
atggccgtgcacctgcccctgtcggtggaggcccaggccgaggcccgcatcctgatgctc
gcctcgaacaacatcctgaagccgtccgacggccgcccggtcaccctgccctcgcaggac
atgatcatcggtctgcaccacctcaccaccgtccgcgagggcgctgtgggcgagggtcgc
gcgttctcctcggtctccgaggcgatcctcgcgaaggaccagggcacgctgcacctcaac
gccaaggtgaagatccgcctggacgactacgtgccgtccgacgcggccgacaccggcgcc
cagccgatcaccgcgatcgtggagaccaccctcggccgcgccctcttcaacgaggcgctg
ccggcggactacccgtacgtggaggaggtcgccgacaagggccagatctcgtcgatcgtc
aacgccctggccgagcggtacccgaaggtggaggtcgccgcggcgctcgaccggatcaag
gacgccggcttctactggggcacccgctcgggcgtcacggtgtcgctgagcgacatcctg
accccgccgaacaaggcgcagatcgtggccggctacgagaagaaggccgcgaagatcacg
gcggagttcgagaagggtctcacgaccgacctcgagcgtcgccaggagctggtgaagatc
tggaccgaggcgaccaacgaggtggccgaggccatgcgcgccaacttcccggtcgacaac
accatcaaccggatggtcacgtccggcgcccgtggtaactggctgcaggtccgcaacatc
gccggtatgcgtggtctggtgaacaacccgaagggtgagatcatcccccgtccgatcatc
tcctcgtaccgcgagggtctgtcggtggcggagtacttcatcgcgacgcacggtgcccgt
aagggtctggccgacacggccctccgtacggcggactcgggctacctgacccgtcgtctg
gtggacgtctcgcaggatgtcatcatccgcgaggacgactgcggcacgaccaagggcctc
gacctcccgatcgcgaccgtcgacgccgagggcgtgctcacgcgcgacccgaacgtcgag
aactcggtgttcgcccgcacgctcgcggccgacgccgtgggctcgaacggcgacgtcgtg
gcgaaggccggcgaggacgtgggcgacgtgctcatcgacaagctggtggccgccggtgtc
caggacatcaaggtccgctcggtgctcacctgcgagtccgcggtcggcgtctgcgccgcc
tgctacggccgttcgctcgcgaccggcaagctggtggacatcggcgaggcggtcggcatc
atcgccgcccagtcgatcggtgagcccggaacgcagctgacgatgcgtaccttccacacc
ggtggttcggcctccgcggacgacatcacccagggtctgccgcgcgtgcaggagctgttc
gaggcccgtacccccaagggtgcgtccccgatcgccgaggccgcaggccgcatcgtcatc
gaggagacggacaagtcccgcaaggtcatcctgaccccggacaacggcgacgagccgcac
gtctacccggtgctgaagcgttcgaccctcctggtggaggacggccagcacgtcgagctc
ggccagcagctgatcgtcggcaccgtcgacccgaaggaggtcctccgggtcaagggcgtc
cgcgaggtgcagaagcacctggtgggcggcgtccagggcgtctaccgctcgcagggcgtg
ccgatccacgacaagcacatcgaggtcatcgtccgtcagatgctccgcaaggtcaccgtc
gtcgaccacggcgacaccgacctgctgccgggtgagctcgtcgaccgttcgcggtacaac
gagatcaaccgcgctgcgctgaccgagggcaagaagacggcgtccgcccgtcaggaggtc
atgggtatcaccaaggcctcgctggcgaccgagtcgtggctgtcggccgcgtccttccag
gagaccacccgcgtcctgacgcaggcggccatggagggcaagtccgacccgctgatcggt
ctcaaggagaacgtcatcatcggtaagctcatcccggccggcacgggcctgtcccgctac
cggaacgtctcggtggaggcgacggaggaggccaaggcggagcggtaccccaaccgcatc
ttcgccgacgactccgcgttcagcgagaacgacctgagcttcgtcgacttcgacagcttc
agctcggacgactacaccccggggacctacaactga
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