Leifsonia shinshuensis: F1C12_19820
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Entry
F1C12_19820 CDS
T06806
Name
(GenBank) AAA family ATPase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lse
Leifsonia shinshuensis
Pathway
lse03420
Nucleotide excision repair
lse03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F1C12_19820
03430 Mismatch repair
F1C12_19820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lse03400
]
F1C12_19820
Enzymes [BR:
lse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F1C12_19820
DNA repair and recombination proteins [BR:
lse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F1C12_19820
MMR (mismatch excision repair)
Other MMR factors
F1C12_19820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_11
PAC4
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QNE37137
UniProt:
A0A7G6YF72
LinkDB
All DBs
Position
4085910..4088441
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AA seq
843 aa
AA seq
DB search
MTSLPDAPSSSSAVPSSVPIILDGWEGDVRPGDGAARGGSGSGSGSGGGHRSPSDRLFAG
LNPQQREAAEYRGPALLIVAGAGSGKTSVLTRRIAGLIESREAWPSEILAITFTNKAANE
MRERVEQLLGGRAQGMWISTFHSACVRILRREAETIGKTQSFTIYDSGDTRALLKRIIKE
LDADTLGFTVAGTSGRISKLKNELTDIETYARSANLSDPQEVMFLEIFRQYTRALRRANA
FDFDDLIAETVFLFRAFPKVAALYQTRFRHILVDEYQDTNHAQYSLIRELTMPVSPDIAE
EMEQHGRNVSKLRDVVGAIPGASLTVVGDSDQSIYAFRGADIRNIVEFERDFPGAKVVLL
EQNYRSTQNILSAANAVIANNFDRKDKKLWTAVGDGDKIIGYTGYSGHDEAQFVADEIEK
LHAAGMDYKDMAVFYRTNAQTRALEEIFIRSALPYKVMGGTKFYERAEIKDAMAYLITVA
NPDDTLALRRILNTPKRGIGPATETQLASYAEDNGFTFRDAMRDAGSLGLGPKVTGAILQ
LSGLLDEAAAKIDPANPAGVAAVADVLTFLLDGSGYLEVLRNSRDPQDEARAENVDELVA
VTREFARNNPDGTLVDFLTEVSLVAAADEIDDSSGSVSLMTLHTAKGLEYDAVFLTGIEE
DLLPHRMSANEPGGPAEERRLFYVGITRAKKRLFLSLAMTRAQFGETAVAMPSRYLQEIP
TDLIDWRQSPGAANGRGGSQSRALNARRPGIGGTAGRWNESYPVGGSAPAERPKAEWPNR
VTGKVRDNGDLELAPGDRIRHADFGDGRVTNVTGEGAKRVAHVQFEKVGAKKLLIKIAPI
DKL
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgacgagccttcccgacgccccctcctcctcttccgcggtgccctcctccgtgccgatc
atcctcgacggctgggagggcgacgtgcgcccaggcgacggcgccgcgcgcggcggatcc
ggcagcggcagcggcagcggaggcggacaccgcagcccgagcgaccgcttgttcgcgggg
ctcaacccgcagcagcgcgaggccgccgagtaccgcggccccgccctcctcatcgtcgcg
ggcgcaggctccggcaagaccagtgtcctgacccggcgcatcgccgggctcatcgagagc
cgggaggcctggccgagcgagatcctggcgatcacgttcaccaacaaggcggccaacgag
atgcgcgagcgcgtcgagcagctgctcggcggccgcgcgcagggcatgtggatctcgacc
ttccactcggcgtgcgtccgcatcctgcgccgggaggccgagacgatcggcaagacgcag
agcttcacgatctacgactccggcgacacccgcgcgctgctcaaacggatcatcaaggag
ctggacgccgacacgctcggcttcaccgtcgcggggacctccggccgcatctccaagctc
aagaacgagctcaccgacatcgagacgtacgcgcgctcggccaacctgagcgacccgcag
gaggtgatgttcctcgagatcttccggcagtacacccgcgctcttcgccgggccaacgcc
ttcgacttcgacgacctcatcgccgagacggtgttcctgttccgcgccttcccgaaggtg
gccgcgctgtaccagacccgcttccggcacatcctggtggacgagtaccaggacaccaac
cacgcgcagtactcgctcatccgcgagctgaccatgccggtctcgcccgacatcgcggag
gagatggagcagcacggccgcaacgtcagcaagctgcgcgacgtggtcggcgccatcccg
ggcgcctcgctgaccgtggtcggcgactcggaccagtcgatctacgccttccgcggtgcg
gacatccgcaacatcgtggagttcgagcgcgacttccccggcgcgaaggtggtgctgctg
gagcagaactaccggtcgacgcagaacatcctgagcgcggccaacgccgtgatcgccaac
aacttcgaccgcaaggacaagaagctctggacggcggtcggcgacggcgacaagatcatc
ggctacaccgggtactccggtcacgacgaagcgcagttcgtcgcggacgagatcgagaag
ctgcacgccgcaggcatggactacaaggacatggcggtgttctaccggacgaacgcgcag
acccgtgcgctggaggagatcttcatccgctcggccctgccgtacaaggtcatgggcggc
accaagttctacgagcgcgccgagatcaaggacgcgatggcgtacctgatcacggtcgcc
aaccccgacgacaccctcgcgctgcgccgcatcctgaacacgcccaagcgcggcatcggc
ccggcgaccgagacgcagctcgccagctatgcggaggacaacggcttcacgttccgcgac
gccatgcgcgacgcgggctcgctcggcctcggccccaaggtgaccggcgcgatcctgcag
ctctccgggctgctggacgaggccgcggcgaagatcgacccggccaacccggcgggagtc
gcggcggtcgcggacgtcctcaccttcctgctcgacggcagcggctacctcgaggtactg
cgcaacagccgcgacccgcaggacgaggcgcgcgccgagaacgtggacgagctggtcgcg
gtgacccgcgagttcgcgcgcaacaacccggatggcacgctggtcgacttcctcaccgag
gtgtcgctggtcgccgcggcggacgagatcgacgactccagcggctccgtgtcgctgatg
accctgcacacggccaaggggctggagtacgacgccgtgttcctgaccggcatcgaggag
gacctcctcccgcaccggatgtcggccaacgagccgggcggaccggcggaggagcggcgg
ctgttctacgtggggatcacgcgcgccaagaagcgcctgttcctctcgctggccatgacg
cgcgcccagttcggcgagaccgcggtcgcgatgccgagccggtacctgcaggagatcccg
acggacctgatcgactggcgccagtcgccgggtgcggcgaacggccggggcggctcgcag
tcgcgcgcgctgaacgcccgccggcccgggatcggcggcacggccggccgctggaacgag
agctatccggtcggcggcagcgccccggccgagcgcccgaaggccgagtggccgaaccgg
gtgaccggcaaggtccgcgacaacggcgacctggagctcgcgccgggcgaccgcatccgg
cacgccgacttcggcgacggccgggtgaccaacgtcaccggcgagggcgccaagcgcgtc
gcgcacgtccagttcgagaaggtgggcgcgaagaagctcctcatcaagatcgcaccgatc
gacaagctgtga
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