Leifsonia shinshuensis: F1C12_20715
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Entry
F1C12_20715 CDS
T06806
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
lse
Leifsonia shinshuensis
Pathway
lse03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lse00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
F1C12_20715
09124 Replication and repair
03420 Nucleotide excision repair
F1C12_20715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lse03021
]
F1C12_20715
03400 DNA repair and recombination proteins [BR:
lse03400
]
F1C12_20715
Enzymes [BR:
lse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F1C12_20715
Transcription machinery [BR:
lse03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
F1C12_20715
DNA repair and recombination proteins [BR:
lse03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
F1C12_20715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
Motif
Other DBs
NCBI-ProteinID:
QNE37299
UniProt:
A0A7G6YFN4
LinkDB
All DBs
Position
complement(4269036..4270679)
Genome browser
AA seq
547 aa
AA seq
DB search
MSDGPLIVQSDRTVLLEVAHPAAEDARHDLAVFAELERAPEHIHTYRITRLGLWNARAAG
HTAEDMLGTLEKYSKFPIPQTVTVDVSETVARYGRLVIERDEEGTLLLRSPDRAVLLEVA
TAKRIAPLLLERRDETTFTVEAWARGQLKQELVKLGWPAEDLAGYTPGTPHPIDLDESGW
ALRDYQRKAVSNFFDGGSGVVVLPCGAGKTLVGAGAMATAKTTTLILVTNTVSARQWRDE
LLKRTSLTAEEIGEYSGQVKEVKPVTIATYQILTAKRKGEYAHLALLDALDWGLVVYDEV
HLLPAPVFKLTAELQARRRLGLTATLVREDGREGDVFSLIGPKRFDAPWKEIESQGFISP
AACFEVRIDLPASDRLSYAAAADDERYRLAATAPAKLDVVRQLVDRHAGERILVIGQYLD
QIDELAEALGAPQLTGATPVDERERLYQEFRDGTTPVLVVSKVANFSVDLPEATVAIQVS
GSYGSRQEEAQRLGRLLRPKQSGLSANFYTLVSRDTVDQDFAQNRQRFLAEQGYSYTILD
AHAVAAA
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatggccccctgatcgtccagagcgaccgcaccgtcctcctcgaagtcgcgcat
cccgcggccgaggacgcccggcacgacctcgccgtcttcgccgagctggagcgcgcgccc
gagcacatccacacctaccgcatcacgcgactgggcctctggaacgcccgcgcggccggc
cacaccgcggaggacatgctcgggacgctggagaagtactccaagttcccgatcccgcag
acggtgaccgtggacgtctcggagaccgtcgcccgctacggccggctggtcatcgagcgc
gacgaggagggcacgctgctgctgcgctctcccgaccgtgccgtgctgctggaggtcgcg
accgccaagcgcatcgcgccgctgctgctggagcgccgcgacgagacgaccttcaccgtg
gaggcctgggcccgcggtcagctcaagcaggagctggtcaagctcggctggcccgccgag
gacctcgccggctacaccccgggcaccccgcacccgatcgacctggacgagagcggctgg
gcgctccgcgactaccagcgcaaggcggtcagcaacttcttcgacggcggctcgggcgtc
gtcgtgctcccctgcggcgctggcaagacgctggtcggcgccggagcgatggcgacggcc
aagacgaccacgctcatcctggtgacgaacaccgtgtcggcgcggcagtggcgagacgaa
ctgctcaagcgcacctccctcacggcggaggagatcggcgagtactcgggccaggtcaag
gaggtcaagccggtcacgatcgcgacctaccagatcctcaccgccaagcggaagggcgag
tacgcgcacctggcgctgctcgacgctctggactggggcctggtcgtctacgacgaggtg
cacctgctgcccgcgccggtcttcaagctgaccgccgagctgcaggcgcgccgccgcctc
ggcctgaccgcgacgctggtgcgcgaggacggccgggagggcgacgtgttcagcctgatc
ggcccgaagcgtttcgacgccccgtggaaggagatcgagtcgcagggcttcatctccccc
gccgcgtgcttcgaggtgcgtatcgacctgccggcctccgaccggctgagctacgccgcg
gccgcggacgacgagcgctaccgcctggccgcgaccgctccggcgaagctggacgtggtc
cgtcagctggtcgaccggcacgcgggcgagcgcatcctggtgatcggccagtacctcgac
cagatcgacgagctcgcggaggcgctgggcgcgccgcagctcaccggcgcgacccccgtg
gacgagcgggaacggctgtaccaggagttccgcgacggcacgacgccggtgctggtcgtc
agcaaggtcgcgaacttctcggtcgacctgccggaggcgacggtcgccatccaggtgtcg
ggctcgtacggctcccggcaggaggaggcccagcgtctcggccgcctgctgcgcccgaag
cagtcgggcctgtcggcgaacttctacacgctggtctcgcgcgacaccgtcgaccaggac
ttcgcgcagaaccgccagcgcttcctagccgaacagggctactcctacacgatcctcgac
gcgcacgccgtcgccgcggcgtag
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