Leifsonia shinshuensis: F1C12_21245
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Entry
F1C12_21245 CDS
T06806
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
lse
Leifsonia shinshuensis
Brite
KEGG Orthology (KO) [BR:
lse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lse03019
]
F1C12_21245 (hrpA)
Enzymes [BR:
lse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
F1C12_21245 (hrpA)
Messenger RNA biogenesis [BR:
lse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
F1C12_21245 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
HA2_C
AAA_22
AAA_19
AAA_30
nSTAND3
NACHT
T2SSE
SLFN-g3_helicase
PhoH
ResIII
AAA_23
HA2_N
DUF374
ABC_tran
TsaE
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QNE37382
UniProt:
A0A7G6YFW7
LinkDB
All DBs
Position
complement(4369480..4373343)
Genome browser
AA seq
1287 aa
AA seq
DB search
MSAPVTLPRIVFPPELPVSQKRDDIARAIRDNQVVIVAGETGSGKTTQLPKICLELGRES
IGHTQPRRLAARTIAERIAEELGQSVGDLVGYQVRFTDRVSAATRVKLMTDGILLNEIHR
DRLLRAYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKVIITSATIDPESFAAHFAAA
DGTPAPIVEVSGRTYPVELRYRPLVAEALEADEDDPDPVPAADRDYLQGINDALDELARE
ASGDVLVFLSGENEIRDAADAIRGRNLPGTEVLPLYGRLSSAEQHRVFQPSTMPGVRRRV
VLATNVAETSLTVPGIKYVVDAGTARISRYSTRAKVQRLPIEAISQASANQRSGRSGRTS
DGIAIRLYSQEDFEKRAEFTEPEILRTNLAAVILQMISLGLGDIAAFPFLTPPDSRGIKD
GLDLLAELGATRPSTRSGGIELTRIGRQLARLPIDPRFARMVVESKRHNTSREVMAIVAG
LTIQDVRERPVEKRGSADEKHARFVDPTSDFLTLLNLWNYLEEQQRELSSSAFRRLCKAE
YLNFLRVREWQDVYRQLRQLAKPLELTIGEPSVNPDGIHRSLLAGLLSHLGLKDIRESGN
KGSARGQRQSEYLGARQARFVIFPGSALAKKQPNAIMSAELVETSRLFARMNAAVDPAWA
EPIAGDLCKRQYSEPHWEKNQGAVVAYERVTLYGVPIIPRRRVQYARIDAELSRELFIRH
ALVDGEWDSRQAFDRANRKLLAELRELEERTRRRDILNDDEAVFEFYDARIPADVVSTRS
FEGWWKKARNETPDLLTMTPEALLEDDAAGIDEEAFPPVWRQGDQRLTLRYRFEPGAEDD
GVTVQVPLALLAGLVPDGFDWQVPGLRQDLVTAMIKSLPKAIRRQVVPAADWAKRLLGEL
SSAAGMDAHDGRRPAASLADTLAATISRQTGSRVTGADFDLERLPAHLRPTFQVIGERGR
PLASGKDLMALQERLRSRARDSVARVAEARQPDAIERSGLTTWDLDELPRHLDTTQKGPG
GTTNTIRAYPALVDDGSSVSIRLMSTPTEQARALPGGVRRLLLASIPSPVAYVQQHLTAN
EKLTLAASPYPNTKALFDDCLLAVIDSVLYRMKPDGQLFMRAEFEAVRDRVSGVVMDSMF
ETVALVTRILTSARAAEKAIGGTTSLAYLPALNDAKTQLAGLVYSGFVSATGLTQLAHLP
RYLNGITQRMQALPTNPGRDRAWQTQVETATALYTEAGGRIPPAPHAPENLVHARWMLEE
FRVSLFAQSLGTAETVSIQRIRKVLGG
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcaccggtcaccctcccccgcatcgtcttcccgcccgagctgcccgtcagccag
aagcgggacgacatcgcgcgcgccatccgcgacaaccaggtcgtgatcgtggccggcgag
accggctcgggcaagaccacgcagctccccaagatctgcctcgaactcgggcgggagagc
atcggccacacccagccgcgccggctcgccgcgcgcaccatcgcggagcggatcgcggaa
gagctcggccagagcgtcggcgacctggtcggctaccaggtccgcttcacggatcgcgtc
tcggcggcgacccgcgtcaagctgatgaccgacgggatcctgctcaacgagatccaccgc
gaccggctgctgcgcgcctacgacacgatcatcatcgacgaggcgcacgaacgcagcctc
aacatcgacttcctgctcggctacctgcgcgagctgctgccgaaacggcccgacctcaag
gtgatcatcacctccgccaccatcgacccggagagcttcgccgcgcatttcgccgcggcc
gacggcacacccgcgccgatcgtggaggtctccggtcgcacctatccggtcgagctgcgc
taccggccgctggtcgcggaggcgctggaggccgacgaggacgacccggatcccgtgccg
gccgccgaccgcgactacctgcagggcatcaacgatgcgctggacgaactggcccgcgag
gcgtcgggcgacgtgctggtctttctctccggcgagaacgagatccgcgacgccgccgac
gcgatccgcggccgcaacctcccgggcaccgaggtgctgccgctgtacggccggctgtcg
tcggccgagcagcaccgcgtcttccagccgtccaccatgcccggcgtccggcggcgggtc
gtgctcgccaccaacgtggcggagaccagcctcaccgtgccgggcatcaagtacgtcgtg
gacgccggcaccgcccgcatcagccgctactccacgcgcgccaaggtgcagcgcctcccg
atcgaggcgatctcgcaggcgagcgccaaccagcgctccgggcggtcggggcgcaccagc
gacggcatcgcgatccggctgtactcgcaggaggacttcgagaagcgggcggagttcacc
gagccggagatcctgcgcaccaacctcgctgcggtcatcctgcagatgatctcgctcggg
ctcggggacatcgcggcgttcccgttcctgacgccgccggactcgcgcggcatcaaggac
gggctcgacctgctggcggagctgggcgcgacgaggccctccacacgctccggcgggatc
gagctgacccggatcggccgccagctcgcccgcctcccgatcgacccgcgcttcgcccgc
atggtcgtggagtccaagcggcacaacacctcccgggaggtcatggccatcgtcgccggc
ctcaccatccaggacgtccgcgagcggcccgtcgagaagcgcggcagcgccgacgagaag
cacgccaggttcgtcgacccgaccagcgacttcctcacgctgctcaacctctggaactac
ctggaggagcagcagcgcgagctgtcctccagcgcgttccggaggctgtgcaaggccgag
tacctgaacttcctgcgggtgcgggagtggcaggacgtctaccggcagctgcgccagctc
gccaagccgctggagctgaccatcggcgagccgtcggtgaatccggacggcatccaccgg
tcgctactggccgggctgctgtcgcacctgggtctcaaggacatccgcgagtccggaaac
aagggatcggcgcgcggccagcggcagtccgagtacctgggcgcgcggcaggcccggttc
gtgatcttcccgggctcggcgctcgccaagaagcagccgaacgcgatcatgtccgccgag
ctggtggagacctcccggctgttcgcacggatgaacgcggccgtcgacccggcctgggcc
gagccgatcgcgggcgacctctgcaagcggcagtacagcgaaccgcactgggagaagaac
cagggcgcggtcgtcgcctacgagcgggtcacgctgtacggcgtcccgatcatcccgcgc
cgccgcgtgcagtacgcgcggatcgacgccgagctgtcccgcgagctgttcatccggcac
gcgctcgtggacggcgagtgggactcgcggcaggcgttcgaccgcgccaaccgcaagctg
ctggcggaactgcgcgagctggaggagcgcacccgccgccgcgacatcctcaacgacgac
gaggccgtgttcgagttctacgacgcgcgcatccccgccgacgtggtctcgacgcgctcc
ttcgaaggctggtggaagaaggccaggaacgagacccccgacctgctgacgatgactccg
gaggcgctgctcgaggacgacgcggccgggatcgacgaggaggccttccctccggtgtgg
cggcagggcgaccagcggctcaccctccgctaccgcttcgagccgggcgcggaggacgac
ggtgtgaccgtgcaggtgccgctggcgctgctcgcggggctcgttccggacggcttcgac
tggcaggtgccgggcctccgccaggatctcgtgacggccatgatcaagtcgctgccgaag
gcgatccgccgccaggtcgtccccgccgccgactgggccaagcgcctgctcggggagctc
tcgagtgcggccgggatggacgcgcacgacggccgccgccccgcggcctccctcgccgac
acgctcgccgccaccatctcgcggcagaccggctcgcgggtgacgggtgcggacttcgac
ctggagcggctgcccgcgcacctgcggccgacgttccaggtgatcggcgagcgcggccgt
ccgctcgccagcggcaaggacctgatggcgctgcaggagcggctgcgctcgcgggcgcgc
gactcggtcgcccgcgtggcggaggctcgccagcccgacgcgatcgagcgctccggactg
acgacctgggacctggacgagctgccccggcacctcgacaccacgcagaagggcccgggc
ggcacgacgaacaccatccgcgcctaccccgcgctggtggacgacgggtcgagcgtgagc
atccggctgatgtcgacgccgaccgagcaggcgcgagcgctgccgggcggggtcagaagg
ctgctgctggcgagcatcccgtcgccggtcgcgtacgtgcagcagcacctgacggccaac
gagaagctgacgctggccgcgagcccgtacccgaacacgaaggcgttgttcgacgactgc
ctgctcgcggtgatcgactcggtgctgtaccggatgaagccggacggccagctcttcatg
cgcgccgagttcgaggcggtgcgggaccgggtgtccggcgtcgtcatggactcgatgttc
gagacggtggcactcgtcacccgcatcctcacctccgcgcgggcggccgagaaggcgatc
ggcgggacgacctccctggcgtacctcccggccctgaacgacgcgaagacgcagctcgcc
ggcctggtctactccggcttcgtgtccgcgacggggctgactcagctcgcgcacctgcct
cgctacctcaacgggatcacgcagcgcatgcaggcgctgccgacgaatccgggccgcgac
cgcgcgtggcagacgcaggtggagacggcgacggcgctctacacggaggcgggcgggcgc
atcccgcccgcgccgcacgcgccggagaacctggtgcacgcgcgctggatgctggaggag
ttccgggtgtcgctgttcgcgcagtcgcttgggacggcggagacggtgtcgatccagcgg
atccggaaggtgctgggcggctag
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