Agrilutibacter solisilvae: I8J32_004785
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Entry
I8J32_004785 CDS
T10348
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lsf Agrilutibacter solisilvae
Brite
KEGG Orthology (KO) [BR:
lsf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lsf03016
]
I8J32_004785
Enzymes [BR:
lsf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
I8J32_004785
Transfer RNA biogenesis [BR:
lsf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
I8J32_004785
Prokaryotic type
tRNA splicing ligases
I8J32_004785
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QSX79211
UniProt:
A0A974Y0K9
LinkDB
All DBs
Position
complement(1081356..1082582)
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AA seq
408 aa
AA seq
DB search
MGTTNYNVIHEPGSAPIKLWTRGVPLEDEARQQLQNIARLPFIHRWIAVMPDVHLGKGAT
VGSVVPTIGAIVPAAVGVDIGCGMIAARTSLVASDLPDNLAGLRSAIERAVPHGRTTGRG
VRDKGAWANAPRRAIEGWSQLEADFRRICERNPRLRNTNNLNHLGTLGTGNHFVEVCLDE
EQRVWFMLHSGSRGVGNAIGTHFIELAKQDMRRWMINLPDQDLAYLPEGSEHYEDYVFAV
DWAQRYARINRQLMMQQVVEAARRVISKPFDAQAEAVNCHHNYVSREHHFGKDVFVTRKG
AVSARKGELGIIPGSMGAKSFIVRGLGNEDSFHSCSHGAGRVMSRTQAKKLISMADHAKA
TAHVECRRDADVLDESPAAYKPIEAVMAAQSDLVEIVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgggcaccaccaactacaacgtcatccacgagcccggcagcgccccgatcaagctgtgg
acgcgcggcgtcccgctggaggacgaggcgcgccagcaactgcagaacatcgccaggctg
cccttcatccaccgctggatcgcggtgatgcccgacgtgcacctgggcaagggcgcgacg
gtgggctcggtggtgccgaccatcggcgcgatcgtgccggcggcggtgggcgtggatatc
ggctgcggcatgatcgccgcgcgcacctcgctggtcgccagcgacctgcccgacaacctg
gctggactgcgcagtgcgatcgagcgcgcggtgccgcatggccgcacgacgggccgcggc
gtgcgcgacaagggtgcctgggcgaacgctccgaggcgggcgatcgaaggctggtcgcag
cttgaggccgacttcaggcgcatctgcgagcgcaatccgcgtttgaggaacaccaacaac
ctcaatcacctggggacgctgggcaccggcaaccacttcgtcgaagtctgcctggacgag
gagcagcgcgtgtggttcatgctgcactcgggctcgcgtggcgtcggcaatgcgatcggc
acgcacttcatcgagctggccaagcaggacatgcgccgctggatgatcaacctgcccgac
caggacttggcctacctgcccgaaggcagcgagcattacgaggattacgtgttcgcggtg
gactgggcgcagcgctacgcacgcatcaaccgccagctcatgatgcaacaggtggtcgag
gcggcgcgcagggtgatcagcaagccgttcgatgcgcaggccgaggcggtcaactgccac
cacaactacgtcagccgcgagcaccacttcggcaaggacgtcttcgtgacccgcaagggc
gcggtgagcgcgcgcaagggcgagctggggatcattcccggcagcatgggcgccaagagc
ttcatcgtgcgcgggctgggcaacgaggacagcttccacagctgcagccacggcgccggc
cgcgtgatgagccggacccaggcgaagaagctgatcagcatggccgaccatgccaaggcc
acggcccacgtggaatgccgcagggacgcggacgtgctggacgagtcgccggccgcgtac
aagccgatcgaagcggtgatggccgcgcagagcgacctggtcgagatcgtccacaccctg
cgccaggtcgtgtgcgtgaagggctga
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