Agrilutibacter solisilvae: I8J32_005620
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Entry
I8J32_005620 CDS
T10348
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lsf Agrilutibacter solisilvae
Pathway
lsf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I8J32_005620 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsf03021
]
I8J32_005620 (rho)
03019 Messenger RNA biogenesis [BR:
lsf03019
]
I8J32_005620 (rho)
Transcription machinery [BR:
lsf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
I8J32_005620 (rho)
Messenger RNA biogenesis [BR:
lsf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
I8J32_005620 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
S1CSD-TOTE-2
Spore_III_AA
AAA_25
AAA
OB_RNB
AAA_22
ResIII
Motif
Other DBs
NCBI-ProteinID:
QSX79346
UniProt:
A0A974Y0U4
LinkDB
All DBs
Position
complement(1292492..1294216)
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AA seq
574 aa
AA seq
DB search
MSDNTPDSGETAEKRVRKARVVKADAPAAATSAPAAPAAPAPAAPPPPSEHSAPPPQQQT
SGDAGSAKPQGGQGGQGSQGGEGSQGGQGGQGGGDHGERGGGDFDGRGGNRRDRFRNRRD
RQRERFRDGGMPDEGGNGENFVPRPHPQVPEGFPQYSLGDLKRMPANKLLELADQLQIQE
GVARARKQDVIFALLKVLTRHGEGVAADGVLEILPDGFGFLRSHEASYLAGPDDTYISPS
QIRRFNLRTGDHLSGRIRWPKDGERYFALAVVDTINGEPLEASKNKVLFENLTPLFPRRK
FKLERADGSTEDITGRILDLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITHNHPDVHL
IVLLVDERPEEVTEMQRTVRGEVVSSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILL
DSITRLARAYNNVVPSSGKVLSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTG
SKMDEVIYEEFKGTGNSEVHLNRRIAEKRVYPAIDINRSGTRREDLLIEPELLQKIWILR
KLLHGMDEIGAMEFLLDKMKTTKSNDEFFSSMKR
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgataacacccccgattccggcgaaaccgccgagaagcgcgtgcgcaaagcacgc
gtcgtgaaggccgacgccccggccgccgctaccagcgccccggccgcccctgcggcgccc
gcgcccgcggctcccccgccgccctccgagcacagcgctccacccccgcagcagcagacc
tccggcgacgccgggtccgccaagccccagggcggtcagggcggccagggcagtcaaggt
ggcgagggcagtcaaggtggccagggcggccaaggcggcggcgaccacggcgagcgtggt
ggcggcgacttcgacggccgcggtggcaaccgccgcgaccgcttccgcaaccggcgcgac
cgccagcgcgaacgattccgcgacggcggcatgcccgacgaaggcggcaatggcgagaat
ttcgtgccgcgcccgcacccgcaggtgcctgaaggcttcccgcagtactcgctgggcgac
ctcaagcgcatgccggccaacaagctgctggaactggccgaccagctgcagatccaggaa
ggcgtcgcccgcgcccgcaagcaggacgtcatcttcgccctgctcaaggtgctgacccgc
cacggtgaaggcgttgccgccgacggcgtgctggagatcctgcccgacggcttcggtttc
ctgcgctcgcacgaggccagctacctggccggcccggacgacacctacatctcgcccagc
cagatccgccgcttcaacctgcgcaccggcgaccacctgtccggccgcatccgctggccg
aaggacggcgaacgctacttcgccctggccgtggtcgacacgatcaacggcgagccgctg
gaagcgtccaagaacaaggtcctgttcgagaacctcaccccgctgttcccgcgccgcaag
ttcaagctcgagcgcgccgacggttcgaccgaggacatcaccggccgcatcctcgacctg
atggcgccgcagggcaaaggccagcgcgcgctgatcgtctcgccgcccaaggccggcaag
accatgatgatgcagcaggtcgccacggccatcacgcacaaccacccggacgtgcacctg
atcgtcctgctggtcgacgaacgccccgaggaagtgaccgaaatgcagcgcaccgtgcgc
ggcgaagtggtctcctcgactttcgatgaacccgccgcccgccacgtgcaggtcgccgaa
atggtgatcgagcgcgccaagcgcctggtcgagcacaagaaggacgtggtcatcctgctc
gactccatcacccgcctggcgcgcgcctacaacaatgtcgtgccctcttcgggcaaggtg
ctgtccggcggcgtcgacgccaacgccctgcaccgcccgaagcgcttcttcggcgctgcg
cgcaacgtcgaggaaggcggcagcctgaccatcatcgccaccgcgctgatcgacaccggc
agcaagatggacgaggtgatctacgaggagttcaagggcaccggcaactcggaagtccac
ctcaaccgccgcatcgccgaaaagcgcgtgtacccggccatcgacatcaaccgctcgggc
acccgccgcgaggacctgctgatcgaaccggaactgctgcagaagatctggatcctgcgc
aagctgctgcacggcatggacgagatcggcgcgatggagttcctgctggacaagatgaaa
accaccaagtcgaacgacgagttcttcagttcgatgaagcgctga
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