Agrilutibacter solisilvae: I8J32_013610
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Entry
I8J32_013610 CDS
T10348
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lsf Agrilutibacter solisilvae
Pathway
lsf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I8J32_013610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsf03019
]
I8J32_013610
03009 Ribosome biogenesis [BR:
lsf03009
]
I8J32_013610
Enzymes [BR:
lsf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
I8J32_013610
Messenger RNA biogenesis [BR:
lsf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I8J32_013610
Ribosome biogenesis [BR:
lsf03009
]
Prokaryotic type
rRNA processing factors
I8J32_013610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2H2_FBX41
Motif
Other DBs
NCBI-ProteinID:
QSX77757
UniProt:
A0A974XXS1
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All DBs
Position
3106637..3110089
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AA seq
1150 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGKITRLEPSLEAAFVDY
GAERHGFLPLKEISRDYFQPGVDHNKAGLKELLREGQEIVIQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPTAGGVSRRIEGDDRAALKEAMDKLNIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQVWKSVAEAALTKPSPFLIYAESRLIIRALRDYMRPDIGEILVDTPEMYAEAR
EFVEQVMPHNQRKLKHYTDDTPLFNRFQIESQIENAYEREVRLPSGGALVIDQTEALTAV
DVNSARATKGGDIEETAFHTNLEAAEEVARQLRLRDLGGLVVIDFIDMSSNKHQREVENR
LQNSLRHDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCEGHGRMRSVESLSLS
ILRLAEEHAMKENTGQVLVQAPTEIANYLLNEKRRALSEIEKRHDSPIVIVADEQLHTPH
YEVTRIRENELGEETSKPSYHRGTPRKLPTHALTKAHLNIPDLPAVTNVKPASPAPIREP
REPVAPIAVAPVAPPVPVAPPPAPGIVDRILGFFRGSRPITVEPTLEQRMQSERGERARA
GRDSNRRDRGGKPGRDSRREDSRRDDSRRDERRGGQPQAQKQQALPQAQPQKGQPQPQAK
GQAPKQQQPREERQPAQAGAPRPGRDQARPQGGRQEGRADAARAEGKDGARADAPRVDNA
RPEPRPERGERVRPEAAVTDALRNEAPAAAAAVASIPDADMAVSSAIAATDAAHVAAGHA
GPASGDAADADAAGEGTGRRRRGRRGGRRRRRGGAGEGAALAGDEMAHGEDSMGEDMLDP
GLMDDEGDDADGERAPAAARSQPEFDFDDLPAPAVADATPAPARETAHTFDTTHRNVAAA
VPPAPAVSAAAVAAAVVAPVVVESTVVAPDVVAPEVIAPEVVAEVIAPAVIAPAVFESTG
NRPTVNGSAEFAPAVMPAAAPAPSMDVAGPAKPAATPADVAASAVSDAASGSADFSDQSP
AAHATPAASTATRFDAVEIAADAGDAAMNDDGASNGETSVDKVAAAADAAAVVNTMPADV
ASSTAPASSEVEPALTAPTPIDETPADDVAVESAPRTAGLFDSLPDNAAPSAVPGNVDTP
REGGSDEQRV
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctcatcaatgcaacgcaggcagaagaactgcgcgttgccatcgtcgac
ggccagaccctgtacgacatcgacatcgaacagccgtcgaaggaacagaagaagtccaac
atctacaagggcaagatcacccgcctcgagccctcgctcgaagccgccttcgtggattac
ggcgccgaacgccacggcttcctgccgctcaaggaaatctcccgcgactacttccagccg
ggcgtcgaccacaacaaggccggcctgaaggaactgctgcgcgagggccaggagatcgtg
atccaggtcgacaaggaagagcgcggcaacaagggcgccgccctgaccacgttcatctcg
ctggccggccgctacatggtgctgatgcccaactcgcccaccgccgggggcgtctcgcgc
cggatcgagggcgacgaccgcgccgcgctcaaggaagcgatggacaagctgaacatcccc
gatgacatgggggtgatcatccgtaccgccggcgtcggccgcgatgccgaggaactgcag
tgggacctggactacctgctccaggtctggaagtcggtcgccgaggcggcgctgaccaag
ccctcgcccttcctcatctacgccgaatcgcgcctgatcatccgcgccctgcgcgactac
atgcgcccggacatcggcgagatcctggtcgacacgccggagatgtacgccgaggcgcgc
gagttcgtcgaacaggtgatgccgcacaaccagcgcaagctcaagcactacaccgacgac
accccgctgttcaaccgcttccagatcgaatcgcagatcgagaacgcgtacgagcgtgag
gtccgcctgccctccggcggcgccctggtcatcgaccagaccgaagcgctgaccgcggtc
gacgtcaactcggcccgcgccaccaagggcggcgacatcgaggaaacggcgttccacacc
aacctggaagcggccgaggaagtggcccgccagctgcgcctgcgcgacctgggcggcctg
gtggtgatcgacttcatcgacatgtcgtccaacaagcaccagcgtgaagtcgagaaccgc
ctgcagaactcgctgcgccacgaccgtgcgcgcgtgcagctgggccggatctcgcgcttc
ggcctgatggagatgtcgcgccagcgcctgcgtccctcgctgggcgaatccagccagatc
gtctgcccgcgctgcgaaggccacggccgcatgcgcagcgtcgaatcgctgtcgctgtcg
atcctgcgcctggccgaagagcacgcgatgaaggagaacaccggccaagtgctggtgcag
gctccgaccgagatcgcgaactacctgctcaacgaaaagcgccgcgcgctgagcgagatc
gagaagcgccacgactcgccgatcgtcatcgtcgccgacgagcagctgcacaccccgcac
tacgaagtcacgcgcatccgcgagaacgaactgggcgaggaaaccagcaagcccagctac
caccgcggcacgccgcgcaagctgcccacgcatgcgctgaccaaggcccacctcaacatc
ccggacctgccggcggtgaccaacgtgaagccggcctcgcccgcgccgatccgcgagccg
cgcgaacccgtggcccccattgccgtcgcgcccgttgcgccccccgtgccggtggccccg
ccgccggcaccgggcatcgtcgatcgcatcctgggcttcttccgcggcagccggccgatc
acggtcgaacccacgctcgagcagcgcatgcagtccgagcgcggtgagcgtgcccgcgct
ggccgcgacagcaaccgccgcgatcgcggcggcaagcccggccgcgactcgcgccgcgag
gactcccgccgggatgactcgcgccgcgacgagcgccgtggcggccagccgcaggcccag
aagcagcaggcccttccccaggcccagccgcagaagggtcagccgcagccccaggccaag
ggacaggctcccaagcaacagcagccccgcgaggagcgccagcccgcccaggccggcgcg
ccgcgtccgggacgtgaccaggcccggccgcagggcggccgccaggaaggccgcgccgat
gccgcgcgtgccgagggcaaggacggcgcacgcgccgacgcgccgcgggtcgacaacgcc
aggcccgaaccccgaccggagcgcggcgagcgcgtccgtccggaagccgccgtcaccgat
gcactgcgtaacgaagcgccggcggccgcggcggccgtcgcgtcgatccccgatgccgac
atggccgtctcatccgccatcgcggccaccgatgcggcccatgtcgcggctggccacgcg
ggtccggcgtccggcgatgcggccgatgccgacgctgccggtgaaggcaccggtcgtcgc
cgtcgcggacgtcgcggcggccgccgtcgtcgtcgtggtggtgcgggcgaaggtgccgcg
ctggccggcgacgagatggcccatggcgaggattcgatgggcgaggacatgctcgacccg
ggtctgatggacgacgaaggcgacgatgccgacggcgaacgcgccccggccgccgcccgc
tcgcagccggagttcgacttcgacgacctgccggcgcccgccgtggccgacgcgacgccg
gcccccgcccgcgaaaccgcgcacacgttcgacacgacgcaccgcaatgtcgccgctgct
gtacccccggcgccggcggtttccgccgccgcggtggccgcagccgtggtggcaccggtg
gtcgtcgagtcgaccgtggtcgcacctgacgtggtcgctcccgaagtgatcgcccccgaa
gtggtggccgaggtgatcgcaccggcggtcatcgcaccggcggtcttcgagtcgacgggc
aaccgtccgacggtcaacggatcggcggagtttgcgccagccgtcatgcccgccgctgcc
ccggccccgtcgatggacgtcgctggcccggcaaagcctgccgcaacgccggccgacgtc
gccgcgtccgccgtatccgacgccgcgtcgggctctgccgacttctcggaccagtcgccg
gcggcgcatgccacgccggcggcctcgacggcgacccgtttcgacgcggtggaaatcgcg
gccgacgcgggcgacgccgccatgaacgacgacggcgcgtccaatggcgaaacctcggtg
gacaaagtcgccgcggctgccgatgcggccgccgtcgtgaacacgatgccggccgacgtg
gcctcgtcgacggctccggccagcagcgaagtcgaacccgcgctgacggcccccacgccg
atcgatgaaacgccggccgacgacgtggcggtggaatccgctccgcgcaccgccggtctg
ttcgacagcctgcctgacaacgccgctccgtcggcggtgccgggcaacgtggacacgccg
cgcgaaggtggcagcgacgaacagcgcgtctga
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