Agrilutibacter solisilvae: I8J32_015975
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Entry
I8J32_015975 CDS
T10348
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lsf Agrilutibacter solisilvae
Pathway
lsf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I8J32_015975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsf03019
]
I8J32_015975
Enzymes [BR:
lsf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I8J32_015975
Messenger RNA biogenesis [BR:
lsf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I8J32_015975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
Utp25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QSX78169
UniProt:
A0A975ARR6
LinkDB
All DBs
Position
complement(3611877..3613178)
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AA seq
433 aa
AA seq
DB search
MSFESLGLAPALLRALAESNYNTPTPIQAEAIPLAMAGHDVLGGAQTGTGKTAAFGLPLL
NRLSKATPPNGPRKPRALILAPTRELAMQVCDSLRGFSRHLRLSITAIYGGAGMQPQIDQ
FRRGVDVLVACPGRLIDHLERGTVKLDGVEILVLDEADRMLDMGFLPAIKRVLGKLPAQR
QTLLFSATFEAQIKSLALEFMRDPRQVQIASQNAIADTIVHRAHPVDASRKRELLTQILA
SRHTEQVLVFGKTKHGCNRLAEQLEASGLQAVAIHGNKSQAQRQKALSQFKAGKARVLVA
TDVAARGLDITNLPLVINYDLPMVAEDYVHRIGRTGRNGAQGEALSLVSPDEAALLRQIQ
RLLKAEVKLDVVAGFEPSRPLQIETAKMPPRGGQPSRGHRPHGKPAPRHAHAGPKQHRGG
QSAKPGARRDQRA
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgaatcgctcgggcttgcgcccgcgttgctgcgcgcgcttgccgaaagcaac
tacaacacccccacgccgatccaggccgaagccattccgctggccatggccgggcacgac
gtgctcggcggcgcccagaccggtaccggcaagaccgccgcgttcggcctgccgctgctc
aaccgcctgtccaaggccacgccgcccaacggcccgcgcaagccgcgcgcgctgatcctg
gcgccgacgcgtgagctggccatgcaggtctgcgacagcctgcgcggcttctcgcgccac
ctgcgcctgagcatcaccgccatctacggcggcgccggcatgcagccgcagatcgaccag
ttccgccgcggcgtcgacgtcctcgtcgcgtgccccggccgcctgatcgaccacctcgag
cgcggcaccgtcaagctggatggcgtcgagatcctcgtgctcgatgaagccgaccgcatg
ctcgacatgggcttcctgccggccatcaagcgcgtgctgggcaagctgccggcgcagcgc
cagacgctgctgttctcggccacgttcgaggcgcagatcaagtcgctggccctggagttc
atgcgcgacccgcgccaggtgcagatcgcctcgcagaacgccatcgccgacaccatcgtg
caccgcgcccatccggtggatgcctcgcgcaagcgcgagctgctgacccagatcctggct
tcgcgccacaccgaacaggtgctggtcttcggcaagaccaagcatggctgcaaccgcctg
gccgaacagctggaagcctccggcctgcaggccgtggcgatccacggcaacaagagccag
gcgcagcgccagaaggcactctcgcagttcaaggcgggcaaggcgcgggtgctggtcgcg
accgacgtcgccgcgcgcggcctggacatcaccaacctcccgctggtcatcaactacgac
ctgccgatggttgccgaggattacgtgcaccgcatcggccgcaccggccgcaacggcgcg
cagggtgaagccctgtcgctggtgtcgccggacgaagccgcgctgctgcgccagatccag
cgcctgctgaaggccgaagtgaagctggacgtcgtcgccggtttcgagcccagccgtccg
ctgcagatcgaaacggcgaagatgccgccgcgtggcggccagcccagccgcggccatcgt
ccgcatggcaagccggcgccccgccatgcccacgccggtcccaagcagcaccggggtggc
cagagcgccaagcccggcgcccgccgcgaccagcgcgcctga
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