Agrilutibacter solisilvae: I8J32_016370
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Entry
I8J32_016370 CDS
T10348
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lsf Agrilutibacter solisilvae
Brite
KEGG Orthology (KO) [BR:
lsf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lsf03009
]
I8J32_016370 (rlmD)
Enzymes [BR:
lsf01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
I8J32_016370 (rlmD)
Ribosome biogenesis [BR:
lsf03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
I8J32_016370 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
MTS
TRAM
PCMT
RrnaAD
Cons_hypoth95
TRM5-TYW2_MTfase
Methyltr_RsmB-F
Methyltransf_11
Methyltransf_15
Methyltransf_23
UPF0020
Ubie_methyltran
CMAS
PrmA
Motif
Other DBs
NCBI-ProteinID:
QSX78231
UniProt:
A0A974XYN6
LinkDB
All DBs
Position
complement(3704874..3706202)
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AA seq
442 aa
AA seq
DB search
MARIDQTPFEIEITGLTHDGRGVARRDGKAIFIAGALPGERVMAKQTSRSRHFDEAATLE
VLQASPDRVQPRCPHFGTCGGCALQHLDESQQILAKQRVLMENLERIGHVTPERVLPPLV
DRQWGYRRKGRFSVRRVEKKEKTLVGFRENDPRFVADLSQCHTVIEQIGGRITGLAQLVD
GLQARRDIPQIEFIAGDPQADGFSGIALTFRHLSPLSDADRDALTAFGQREGFAIFLQPG
GVDTVHPLWPANPRLAFRLPEWDVEFLFRPLDFIQVNAGLNTRMIQSTLDLLDPQPGDRV
LDLFCGLGNFTLPLARRVREVVGVEGEAGLVRRARENAEHNGIANAQFHAADLGKDLSDH
TWMREGFDRLLLDPPRSGADFVLTQLPLKQFRRIVYVSCHPASLARDAGYLVNQHGWKLR
AAGVMDMFPHTAHVESIAMFER
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
gtggcccgcatcgaccagacgcccttcgaaattgaaatcaccggcctgacccacgacggc
cgcggcgtcgcgcgccgcgacggcaaggccatcttcatcgccggtgcgctgcccggcgaa
cgcgtgatggccaaacagacttcgcggtcgcgccacttcgacgaagcggccacgctggag
gtcctgcaggccagccccgaccgcgtccagccccgttgcccgcatttcggcacctgcggc
ggctgcgcgctgcagcacctggatgagagccagcagatcctggccaagcagcgcgtgctg
atggaaaacctggaacgcatcggccacgtcacgcccgaacgcgtgctgccgccgctggtg
gaccgccagtggggctatcgccgcaagggacggttctcggtgcgacgggtcgagaagaag
gaaaagaccctcgtcggcttccgcgagaacgacccacgcttcgtcgccgacctcagccag
tgccacacggtcatcgagcagatcggcggccgcatcaccggcctggcgcaactggtggac
ggactgcaggcgcgccgcgacatcccgcagatcgagttcatcgccggcgacccgcaggcc
gatggcttcagcggcatcgcgctgaccttccgccacctcagcccgctgtccgacgccgat
cgcgacgcactgacggccttcggccagcgcgagggcttcgcgatcttcctgcagcccggc
ggcgtggacaccgtgcacccgctgtggccggccaatccgcgcctggcgttccggctgccc
gagtgggacgtcgagttcctgttccgtccgctggacttcatccaggtcaacgccgggctc
aacacccgcatgatccagtccaccctcgacctgctcgatccgcagccgggcgaccgcgtg
ctcgacctgttctgtggcctgggcaacttcaccctgccgctggcgcgccgcgtgcgcgag
gtggtgggcgtggaaggcgaggccggcctggtgcgccgcgcgcgcgagaacgccgagcac
aacggcatcgccaacgcccagttccatgccgccgacctgggcaaggatctgagcgaccac
acgtggatgcgcgagggcttcgatcgcctgctgctcgacccgccgcgttcgggcgccgac
ttcgtcctcacccagttgccactcaagcagttccgccgcatcgtctacgtcagctgccac
ccggcctcgctcgcgcgcgacgcgggctacctggtcaaccagcacggctggaaactgcgt
gccgcgggcgtgatggacatgtttccgcacactgcgcacgtggaatcgatcgcgatgttc
gagaggtaa
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