Listeria seeligeri: lse_1247
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Entry
lse_1247 CDS
T01184
Symbol
pnpA
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lsg
Listeria seeligeri
Pathway
lsg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
lse_1247 (pnpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsg03019
]
lse_1247 (pnpA)
03016 Transfer RNA biogenesis [BR:
lsg03016
]
lse_1247 (pnpA)
Enzymes [BR:
lsg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
lse_1247 (pnpA)
Messenger RNA biogenesis [BR:
lsg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
lse_1247 (pnpA)
Transfer RNA biogenesis [BR:
lsg03016
]
Prokaryotic type
tRNA degradation factors
lse_1247 (pnpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
KH-I_KHDC4-BBP
RNase_II_C_S1
S1_RRP5
KH_2
S1_2
RICTOR_M
SPATA25
MUG2_C
Motif
Other DBs
NCBI-ProteinID:
CBH27398
LinkDB
All DBs
Position
1268565..1270736
Genome browser
AA seq
723 aa
AA seq
DB search
MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTV
NYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVD
QDCSPEMAAMLGSSVALVISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAG
THDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIDAVGKEKREIELFVSDPE
LEAEVKAASEGKMKAAIKTEEKKAREAAIEDVKEEILEGYKTKELENEAEVLSEVAHILE
MIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTLAP
LREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSE
EDFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTIL
SDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILEEALTQAKEGRLHILEHLT
STISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIEETGVKIDIEQDGTVYIA
SQDQAMNRKAIAIIEDIVREVQVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHER
VGKVEDILKLGDEVTVKVIEVDHQGRVNLSRKVLLEKKEQPEGDKKPQAEKKYYPKKDKP
ESK
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaaacaagtattttcaacagaatgggcaggtaaaacattatctgtcgaagta
ggtcaattagcaaaacaagcaagtggagcagcattaattcgttacggagatacagttgtt
ttaacagcagctgtaggttcaaaaaaaccacgtccaggtgactttttcccgttaacagtt
aactatgaagaaaaaatgtactctgtcggtaaagttcccggtggattcttaaaacgtgaa
ggacgtccaagcgaccgtgcaacattaacggctcgtttaattgaccgtccaattcgccca
ctttttgcagaaggtttccgtaatgaagttcaaattacttctacagtattcagtgtagac
caagattgctcaccagaaatggcagcaatgctaggttcttctgtagcactcgtgatttct
gatattccatttgatggtccaatcgcaggtgttgatgttggtcgcattgatggcaaatac
gttattaacccaactattgaacaagcagaaaaaagcgatattagcttaacagttgctgga
acacatgatgcaatcaacatggtcgaagctggagcgaaagaagtttcagaagaggcaatg
cttgaagctattatgtttggtcatgaagaaattaaacgtctttgtgaattccaacaacaa
attattgatgctgttgggaaagaaaaacgcgaaattgaattatttgtgagtgatcctgaa
cttgaagcagaagtaaaagcagcaagtgaaggaaaaatgaaagctgcaatcaaaacagaa
gagaaaaaagctcgtgaagctgctattgaagacgtaaaagaagaaattttagaaggctat
aaaacaaaagaactagaaaatgaagcagaagttcttagtgaagtagcacatattttagaa
atgattgaaaaagatgagatgcgtcgtcttatttctcaagataaaatccgtcctgatggt
cgtaaagtaaacgaaattcgtccgctttcttctgaagttggtttgcttccacgtgttcat
ggttctggtttatttactcgcggacaaacccaagctttaagtgtttgtacgcttgcacct
ttacgcgaacaccaaattattgatggtctaggaacggaagaatataaacgcttcatgcat
cattataacttcccacaatttagtgttggggaaactggtcctcgtcgtgctccaggtcgt
cgtgaaatcggtcacggtgctttaggggaacgtgctttacaatacgtaatcccttccgaa
gaggatttcccgtacactattcgtcttgtatcagaagtgcttgaatcaaatggttctagt
tcgcaagcaagtatttgtggctctacacttgctatgcttgatgcaggtgttccaattaaa
gcaccagttgctggtattgcaatgggacttgtaaaattaggtgacgattatactattcta
tcagatatccaaggtatggaagatcactttggcgacatggattttaaagttgctggaaca
aaagatggtatcacagcacttcaaatggacatcaaaattgacggattaagccgccaaatt
ttagaagaagcattaactcaagctaaagaaggtcgcttgcatattctagaacacttaaca
agcacaattagtgcaccacgtgaagaactttctgcgtatgcaccaaaaattattaccctt
aacattaaaccagaaaaaattaaagatgttatcggacctggtggaaaacaaatcaatgca
attattgaagaaactggcgtgaaaattgatatcgagcaagatggtacagtttatattgct
tctcaagatcaagcaatgaaccgtaaagcaattgctatcattgaagatatcgttcgtgaa
gttcaagtaggggaagtttacacaggtaaagttcgtcgcattgaaaaatttggtgcattt
gttgaattattcaaaggaacggatggtttagttcatatttctgaattagcacatgaacgt
gttggaaaagtagaagatatcttaaaacttggtgatgaagttactgtaaaagttatcgaa
gtcgatcatcaaggtcgtgttaacttatcgcgcaaagtattacttgagaaaaaagaacaa
ccagaaggcgataaaaaaccgcaagctgagaaaaaatactaccctaaaaaagacaagcct
gaatctaaataa
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