Listeria seeligeri: lse_1316
Help
Entry
lse_1316 CDS
T01184
Name
(GenBank) HDIG domain protein
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lsg
Listeria seeligeri
Pathway
lsg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
lse_1316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsg03019
]
lse_1316
Messenger RNA biogenesis [BR:
lsg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
lse_1316
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
HTH_6
FUT8_N_cat
Motif
Other DBs
NCBI-ProteinID:
CBH27467
LinkDB
All DBs
Position
1336075..1337637
Genome browser
AA seq
520 aa
AA seq
DB search
MTIAITIISSLLFLIVGLVVGSLIFKSSTEKKLAAARGTAELIVEDAKKEAETTKKEALL
EAKEENHRLRTEIENELRGRRTETQKAENRLLQREENLDRKDTSLSKREATLERKEESIS
KRQQQIEEKESKLAEMIQAEQTELERISALSKEEAKSIILNQVEDELTHDTAIMVKESEN
RAKEESDKKAKNILSLAIQRCAADHVAETTVSVVTLPNDEMKGRIIGREGRNIRTLETLT
GIDLIIDDTPEAVILSGFDPIRREIARIALEKLVQDGRIHPARIEEMVDKARKEVDEHIR
EVGEQATFEVGIHSIHPDLIKILGRLRYRTSYGQNVLNHSLEVSKLAGILAGELGEDVTL
AKRAGLLHDIGKAIDHEIEGSHVEIGVELATKYKENDVVINSIASHHGDTEATSVIAVLV
AAADALSAARPGARSETLENYIRRLEKLEEISESYDGVEKSYAIQAGREVRIIVEPDAID
DLASYRLARDIRKRIEEELDYPGHIKVTVIRETRAVEYAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgacaatcgcaatcacgatcatctccagtttgcttttcttaatcgtcggtctagttgtt
ggttctctaatttttaaatctagtacagagaaaaaactggctgctgcaagggggactgcg
gaattaattgtagaagatgcaaagaaagaagcagaaactacaaaaaaagaagcattgctt
gaagcgaaggaagagaatcataggttacgtactgaaatcgaaaatgaacttcgtgggcga
agaacagagacacagaaagcagaaaatcgcttattgcaaagggaggaaaacctcgaccgt
aaagatacttctttaagtaaacgagaagctacacttgaaagaaaagaggagagtatcagt
aaacgtcaacaacaaattgaagagaaagaaagcaaactagctgagatgattcaagcagag
cagacagaacttgaaagaatatctgcactgagcaaagaagaagcgaaatcaatcatcctt
aaccaggtagaagatgaattaacacatgatacagcaatcatggtgaaagaatcagaaaac
cgggcgaaggaagagtcggataaaaaagcaaagaatattctctcactagctatccagcgt
tgtgcagctgatcatgtggcagaaacaactgtatctgttgttaccttaccaaatgatgag
atgaagggacggataatcggacgtgaaggccgtaatatccgtacgcttgaaacgctaact
ggaattgatttgataattgatgataccccggaagcagtaatactttccggatttgatcca
attcgacgtgaaatcgctagaatcgccttagaaaaacttgttcaagatggaagaatccat
ccagctcgaattgaagaaatggtggacaaagcccgtaaagaggtggatgaacacattcgt
gaagtcggggaacaagcaacgtttgaagtgggaattcattccattcatcctgatttgata
aaaattcttggccgcttgcgttatcgtactagttacggtcaaaacgttcttaaccactca
ctcgaagtttcgaaacttgctggaattctagcaggagagcttggagaagacgttacgctt
gctaaacgggccggactgcttcatgacatcggaaaagcaattgaccatgaaattgaagga
agtcacgtagaaatcggcgtggaacttgctaccaaatacaaagaaaatgatgtggttatc
aatagtattgcttcccatcatggagatacagaagctacttctgttatcgctgtattggtt
gctgcggcagatgcactttctgctgcaagaccaggtgctcgtagtgaaacgcttgaaaac
tatatccgtcgtttagaaaaattagaagaaatttctgagtcttatgatggtgtagaaaaa
tcttatgcaattcaagcaggacgcgaagtacgtatcatcgttgagccagatgctattgat
gatcttgcttcttaccgacttgctcgcgacataagaaaacgaattgaagaggaattagat
tatccaggtcatattaaagtgaccgtcattcgtgaaacaagagcagtagaatacgctaag
taa
DBGET
integrated database retrieval system