Ligilactobacillus salivarius CECT 5713: HN6_00289
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Entry
HN6_00289 CDS
T01962
Symbol
srmB
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
lsi
Ligilactobacillus salivarius CECT 5713
Pathway
lsi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lsi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HN6_00289 (srmB)
09124 Replication and repair
03420 Nucleotide excision repair
HN6_00289 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsi03021
]
HN6_00289 (srmB)
03036 Chromosome and associated proteins [BR:
lsi03036
]
HN6_00289 (srmB)
03400 DNA repair and recombination proteins [BR:
lsi03400
]
HN6_00289 (srmB)
Enzymes [BR:
lsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
HN6_00289 (srmB)
Transcription machinery [BR:
lsi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
HN6_00289 (srmB)
Chromosome and associated proteins [BR:
lsi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
HN6_00289 (srmB)
DNA repair and recombination proteins [BR:
lsi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
HN6_00289 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD
DEAD_2
ResIII
PhoH
Helicase_C
AAA_7
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ADJ78619
LinkDB
All DBs
Position
complement(379734..382100)
Genome browser
AA seq
788 aa
AA seq
DB search
MTTSIGVRKLVEFILKKGNLTSDTNSQNTALDGISIHQRLQKKFSNDTKSEIALKKELDI
DGETWIIHGRADGIKYIDNQPQQVIEIKTSSPQFSELAPNTLELYWAQAKIYAHIIMEQE
QLPELALKLIYVQTTDNTISEETQVINQADAQNFFNNIITEFTDWIKLQHQLQKERDHSI
NKLDFPFSSYRKNQHEFAAAVYKTIALNKKLLVEAPTGTGKTISTIFPAVKALDTKKCQK
IFYLTAKQSTRKVAEETLQLLVKHGLSITAITLTSKEQITFPEELDLADDENPYYLGYYD
RLRPALIDILTNEKVITRKIVENYAKKHMLDPFEFSLDISNSCDVVICDYNYLFDPLVKL
QRFFTERNYDYTFLLDEAHNLVSRSRDMYTKEISSQQIKDLLDKLQTLPHPPQKIVDKLN
TLLNDFDLIKEPLVNYQQADVIIEEKLASLTKKIMYFCDFTTDWLAENPHFSLKDDLLEF
FFAAYAFVKISDYYNNSFRTHLFITENSELLIRVFCLDSSELIANSLNLGGSAVLFSATL
SPLNYYQEMFGLIDNSLLYQLSSPFDESNLNLLITSYIPVTYQQRQQSLGKIIDAIHTMI
ATKQGNYLIFLPSYTFLKQVVVAFNQAYPHIDTVIQENDMTREQQEDFLNYFIENPTKIL
VGFAVLGGSFSEGIDLKGNRLSGVAIVSVGLPKLSKETNELQSYFNNKQKDGFQYAYQLP
GLNNIFQAAGRVIRSSTDVGAVLLIDNRFATSRYAKFFPPHWKYAQIIHNQYELEQNLST
FWNKNKDS
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgacaacttctattggggtcagaaaattagtcgaatttatcctaaaaaaaggaaactta
acatctgatactaattcacaaaatactgcgctagatggaattagtattcatcaacgatta
cagaaaaaattttctaatgatacaaaatcagaaattgcgttaaaaaaagaattagacatt
gatggtgaaacttggattattcatggcagagctgatggaattaaatacattgataaccaa
ccacaacaggttattgaaataaaaacttctagtccacaattttcagaattagctcctaat
actctcgaactttattgggctcaagctaaaatttacgctcatataattatggaacaagaa
caactaccagaattagctcttaaactaatttatgtacagactactgataatacaatttct
gaagaaactcaggttattaatcaggctgatgctcaaaatttctttaataacattattaca
gaatttacagattggataaaactccagcatcaactccaaaaagaacgcgatcattctatt
aacaaattggattttccattttcatcttataggaaaaatcaacatgaatttgctgctgca
gtttataaaacaatagctttaaataaaaaattattagttgaagcccctactggaaccggg
aaaactatttcaactatttttcctgcagtcaaggctttagatactaaaaaatgtcaaaaa
atattctacttaactgctaaacaaagtactcgcaaagtagctgaagaaactttacagtta
ttggtaaaacatggactttctattactgcaattaccctaacttctaaagagcaaattaca
tttcctgaagaattagatttggcagacgatgaaaatccttattacttgggttattatgat
cgcctacgaccagctttgatagatattttaaccaatgaaaaagtgattacccggaaaatt
gtggaaaattatgctaagaaacatatgcttgatccttttgaattttctctagatattagt
aattcttgtgatgtagtaatatgcgattataactacctttttgatcctttagttaagtta
caacgattctttacagaaagaaactatgattatacttttttgttagatgaggctcataat
ctagttagtcgttctcgagatatgtatactaaagaaatttcttcacaacaaatcaaggat
ttattagacaaactccaaacgctgccacatccaccccaaaagattgtggataagctaaat
actcttttaaatgattttgatttgattaaggaacccttagttaattatcaacaagctgac
gtaataattgaggaaaaacttgcctcactgacaaaaaaaataatgtatttttgtgatttt
actactgattggctggcagaaaatccacatttttctcttaaagatgacttactggaattt
ttcttcgccgcttatgcctttgttaagattagtgattattacaataatagctttagaaca
catttatttattactgaaaattctgagttactaattagggtgttttgcttagattctagt
gaattgattgctaatagccttaacttgggaggtagtgctgttcttttttcagcgactttg
tcaccattaaattactaccaagaaatgtttggattaattgataacagtttgttataccag
ctatcctcacctttcgatgaaagtaatcttaacttgttaataacatcttatattcctgtt
acttatcaacaaaggcagcaaagtcttggaaaaattattgatgctattcacactatgatt
gctactaagcaagggaattatctgattttcttaccatcttatacttttttgaagcaggta
gttgtggcatttaatcaagcttatccacatattgacactgtaattcaagaaaacgatatg
actagagaacaacaggaagattttttgaattatttcattgaaaatccaactaaaatttta
gtcggttttgctgtattaggtggtagtttttcagaaggaattgatttaaaaggtaatcgt
ctaagcggtgtagcaatagttagtgtgggacttccaaaattaagtaaagaaactaatgaa
ctccaaagttacttcaataataaacaaaaagatggatttcaatatgcttatcaacttcct
ggacttaataatattttccaggctgctggtcgtgttatccgaagttctactgatgtaggt
gcggtccttttaatagacaatcgttttgctacttctagatatgcgaaatttttcccacca
cattggaaatatgcacagattattcacaatcaatatgaacttgaacaaaacttatctaca
ttttggaataaaaataaagacagctaa
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