Ligilactobacillus salivarius CECT 5713: HN6_00296
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Entry
HN6_00296 CDS
T01962
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lsi
Ligilactobacillus salivarius CECT 5713
Pathway
lsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HN6_00296 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsi03019
]
HN6_00296 (srmB)
03009 Ribosome biogenesis [BR:
lsi03009
]
HN6_00296 (srmB)
Enzymes [BR:
lsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HN6_00296 (srmB)
Messenger RNA biogenesis [BR:
lsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HN6_00296 (srmB)
Ribosome biogenesis [BR:
lsi03009
]
Prokaryotic type
rRNA helicases
HN6_00296 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
ADJ78626
LinkDB
All DBs
Position
389910..391388
Genome browser
AA seq
492 aa
AA seq
DB search
MKFGELGLDKSLLKAVKRSGFEEATPIQAETIPLVLAGNDVIGQAQTGTGKTAAFGLPVL
QQLDLDLRQIQAVIISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLEQHT
PHILVGTPGRLLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQTLL
FSATMPKEILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKTKEFEKFDIMTRLIDVQAP
ELTIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVATDVA
ARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRVIEKLTK
KRMDPLKPPTQDEAFIGQVSSALDDIKDLIADTDTERYEAQAQALLEQYDAVEVVAAFLN
NMTKKDASDVPVKITPEKPLPRRKKGRRNGNYRRGNDNFKRSKRFNKHDRNNRDNKRRSG
KKNRFTIRTKKA
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttggcgaattaggattagataaaagtttgttaaaggctgtaaagagaagtggt
tttgaagaagctactcctattcaagcagaaacgataccacttgttttagctggtaatgat
gtaattggacaagcacagacaggtaccggtaaaactgcagcctttggtttgccagtatta
caacaattagatttggatttgagacaaattcaagcagtaataatctcaccaactcgtgaa
ttagcaattcaaacacaagaagaactttttcatttaggaaaagaaaaaagagctaaggtc
caagttgtgtatggcggagctgacattagacgtcaaattaagcaacttgaacaacacaca
ccacatattttagtaggaacaccaggacgattacttgatcatattcaaagaggaacaatt
aacttggctcatgttaaacatttgattttagatgaagctgatgaaatgctagacatggga
ttcttggatgatattgaaaagattatccaagcagtaccagctgaacgtcaaactttatta
ttctcagcaactatgcctaaagaaatcttgaagattggcgaaaaatttatggttaatcca
caaattgtaaaaatcaaagctaaagagttaacaacagatttagttgatcaatattttgta
aaaacaaaagagtttgaaaaatttgatattatgactagattaattgatgttcaagctcct
gaattaacaattgtttttggtagaactaaacgtcgtgttgatgaactttctcgtggttta
gaagcacgtggttacaatgcagctggcattcatggtgatttgactcaacaacgtcgtatg
aacgtattacgtaagtttaaaaatggagatttagatatcttagtagcaactgatgtcgca
gcccgtggtttagacatctcaggagttactcatgtttacaactatgatattccacaagat
cctgaaagttatgttcaccgtattggtagaactggtcgtgcgggacaccatggaacttcc
gtaacatttgttacacctaacgaaatggattacctacgtgttatcgagaaattaactaag
aaacgcatggatccattgaagccaccaactcaagatgaagcatttattggacaagtttca
agtgctttagatgatattaaagatttaatagctgatacagatacagaacgctatgaagca
caagcacaagcactattggaacaatatgatgcagttgaagtagtagcagcctttttgaat
aatatgactaagaaggatgcttctgacgttcctgttaagattacaccagaaaaaccacta
cctcgccgtaaaaaaggtcgtcgtaacggaaattatcgtcgcggtaatgataactttaag
cgtagtaaaagatttaataagcacgatagaaataatcgtgataataagcgcagaagtggc
aaaaaaaatagatttactattagaacaaagaaagcttaa
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