Ligilactobacillus salivarius CECT 5713: HN6_00451
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Entry
HN6_00451 CDS
T01962
Symbol
nei
Name
(GenBank) Formamidopyrimidine-DNA glycosylase (Fapy-DNA glycosylase) (DNA-(apurinic or apyrimidinic site) lyase mutM) (AP lyase mutM)
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lsi
Ligilactobacillus salivarius CECT 5713
Pathway
lsi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lsi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HN6_00451 (nei)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsi03400
]
HN6_00451 (nei)
Enzymes [BR:
lsi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
HN6_00451 (nei)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
HN6_00451 (nei)
DNA repair and recombination proteins [BR:
lsi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HN6_00451 (nei)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
zf-FPG_IleRS
Fapy_DNA_glyco
NFACT_N
DUF7573
Ribosomal_S13
Auto_anti-p27
DZR
ArgoMid
RNHCP
Motif
Other DBs
NCBI-ProteinID:
ADJ78733
LinkDB
All DBs
Position
540045..540668
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AA seq
207 aa
AA seq
DB search
MISHLRMEGKYFVEPSTKEVEKHTHVVFDFTDGTSLRYNDVRKFGRMQLVKTGVEMQTAG
LAKLGPEPKEETFIVEDFSKNLKRRKKAIKNALLDQTIVAGLGNIYADEVLWMSKIHPET
PANKLTEEEVKVLRDNIIKELALATEAGGTTIRSYTDAFRHSGGFQFSLHAYQRTGDPCE
RCGTPIQRIVVGQRGTHFCPKCQVVKS
NT seq
624 nt
NT seq
+upstream
nt +downstream
nt
atgatttcccatttgagaatggaagggaaatatttcgttgaaccaagtacaaaagaagtt
gaaaaacatacccacgtagtatttgattttacagatgggacatcacttagatataacgat
gttagaaagtttggcaggatgcaattggttaaaacaggagtggaaatgcaaactgctggc
ttagctaaattagggccagaacctaaagaggaaacatttatagttgaagatttttctaaa
aatttgaaaaggagaaaaaaagctataaaaaatgccttattagatcaaacaatagtggca
ggtttgggaaatatttatgcagatgaagtgttgtggatgagtaaaatccatcctgaaaca
ccagcaaataaattaactgaagaggaagttaaagttttacgagataatattattaaagag
ttagcgttagctaccgaagctggaggaactacaatcagatcatatacagatgcatttaga
cattctggaggatttcagtttagcttacatgcttatcaaagaacaggagatccttgtgag
agatgcggaacaccaattcaaagaattgttgtaggtcagagaggaacacatttttgtcct
aagtgtcaggtggtaaaatcatga
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