Ligilactobacillus salivarius CECT 5713: HN6_00972
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Entry
HN6_00972 CDS
T01962
Name
(GenBank) UPF0042 nucleotide-binding protein
KO
K06958
RNase adapter protein RapZ
Organism
lsi
Ligilactobacillus salivarius CECT 5713
Brite
KEGG Orthology (KO) [BR:
lsi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsi03019
]
HN6_00972
Messenger RNA biogenesis [BR:
lsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HN6_00972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapZ-like_N
PapZ_C
AAA_21
AAA_22
AAA_18
DUF2380
AAA_33
AAA_16
AAA_28
SKI
Motif
Other DBs
NCBI-ProteinID:
ADJ79246
LinkDB
All DBs
Position
complement(1206505..1207386)
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AA seq
293 aa
AA seq
DB search
MSALQLVIVTGMSGAGKTVAVQSFEDLGYFCVDNMPPKLLPKFYELVKESGKITKIALVV
DLRSRAFYDEIVEMVRELDENEFNSSRILFLDASDEELVARYKETRRSHPLAMEGRILDG
IHLERELLAPIKSNAQIIIDTSKLSPRQLREEIFKNFEARDTKTFHIEVMSFGFKYGLPI
DADIVMDVRFLPNPYYVPELRNKTGKDDAVYEYVMKSEKTEEFYQKFVSLLKYVIPGYIA
EGKSNVTIAIGCTGGQHRSVALAERIGNELSKEYPVHMSHRDMNKRKETVNRS
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcattgcaattagtaatagttaccggaatgagtggtgctggtaaaacagtagct
gtacagagttttgaagatttaggttatttttgtgtggataatatgccgcctaaattattg
cctaaattttatgaattggttaaggaatctgggaaaataacgaaaatagcattagtagta
gatttaagatctcgtgctttctatgatgaaattgtagaaatggtgagagaattagatgaa
aatgaattcaattcttctagaatattgtttttagatgcttcagatgaagaactagttgct
agatataaagaaactagaagatctcatccgctggctatggagggaagaattttagacgga
attcatttagaaagagaactattggcaccaattaagtcaaatgctcaaatcatcattgat
acctctaaattatctccacgtcaactaagagaagagatatttaagaatttcgaagccaga
gataccaaaactttccatattgaagttatgtcatttggtttcaaatatggattacctata
gatgcagatattgtcatggatgtacgtttcttacctaatccttattatgtgccggaattg
cgaaataaaactggtaaggatgatgctgtatatgaatatgtgatgaaatctgagaaaaca
gaagaattttatcaaaaatttgtatctcttctaaaatatgtaattccaggttatattgca
gaaggaaagtctaatgtaacaattgcaattggatgtacagggggacaacatcgctcagta
gcattagctgaaagaataggtaatgaactatctaaagagtatccggttcatatgtcacat
cgtgatatgaataaacgaaaggagacggtgaatcgctcatga
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