Ligilactobacillus salivarius CECT 5713: HN6_01160
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Entry
HN6_01160 CDS
T01962
Symbol
rep
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lsi
Ligilactobacillus salivarius CECT 5713
Pathway
lsi03420
Nucleotide excision repair
lsi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lsi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HN6_01160 (rep)
03430 Mismatch repair
HN6_01160 (rep)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsi03400
]
HN6_01160 (rep)
Enzymes [BR:
lsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HN6_01160 (rep)
DNA repair and recombination proteins [BR:
lsi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HN6_01160 (rep)
MMR (mismatch excision repair)
Other MMR factors
HN6_01160 (rep)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD_C
UvrD-helicase
AAA_19
UvrD_C_2
SLFN-g3_helicase
PhoH
DEAD
AAA_30
NACHT
AAA_16
NPHP3_N
DUF4351
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ADJ79413
LinkDB
All DBs
Position
complement(1447797..1449704)
Genome browser
AA seq
635 aa
AA seq
DB search
MIYDWRAPISSIYYDGKLGEVTYDTPDGPQTAVLTLKRQFMVEDGKIITLFDTDETVGDQ
MLLEVLDESSDIKMKSIVTTIQKEQNKIIRDTKSDLLFVQGAAGSGKTSAVLQRVAYLLY
RYRGNLSSSQVVLFSPNQLFNDYIDQVLPELGEQNMVQMTYYQYSQRRLPKIHVETLQER
FDEDNQPLRRKISALKSSLTMFNATTNYSDYLNTAGMRFRDIKYNGEIFFSKKDIKKIYY
SFNSNYNLRNRLSATKEKLIKILNSKVGELAKQDNVQKQIQDLSREELNELYGDEPRNFV
NGDQELKFLARSYVMKQLRPVQRAIVRNRFLSINKQFVHFMRNIPELVDLSKFDLTLDQW
NNDVDMTVNHLKNHKLTIADVTIYLYLYDLITGKRGEVDIKHVFIDEIQDYTAYQLAYLK
FGFPRAKFTMLGDLNQAIFTKENSHTLLDELGTMFDKDKIKVIQLTQSYRSTQQITDFTK
EVLVNGEKVTSFARKGPLPTITIDSDEEKLVNDVVMQLHRNDAEKMTTAIIGKTLAECEK
LTEELKQKGAQVTLIKTENQRLVPGIIVVPAFLAKGLEFDAVIMWNANRNNYHDESERQL
VYTICSRAMYRLDIFAVKELTPLMDRVNPELYEML
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgatttatgattggcgtgctccaatttctagtatttactatgatggtaaattaggagaa
gtaacatatgatacacctgatggcccacaaacagcagtattaactctaaaaagacagttt
atggtagaagatggcaagatcataactttatttgacactgatgaaactgttggggatcaa
atgttattggaagttctagacgaatcttctgacattaagatgaagagcattgttactacg
attcaaaaagaacaaaataagattatcagagatactaagtctgacttgctatttgttcaa
ggtgctgcaggttcaggtaaaacatctgctgtattacaaagagtagcatatctattgtat
cgttatcgtggaaatttgagctcgagtcaagtagtattattttcaccaaaccagttattt
aatgactatattgatcaagttctaccggaactaggggaacaaaatatggttcaaatgact
tactatcaatattcacaacgtcgtctacctaagatacatgtagagacgttacaagaaaga
tttgatgaagataatcagccattaagaagaaaaatttcagctttaaaaagtagcttaaca
atgtttaatgcgacaactaattatagtgattatttaaatactgctggaatgagatttaga
gatataaaatataatggagaaatcttcttctctaaaaaagatataaagaaaatttactat
agttttaatagtaattacaatctacgtaatcgtttgtctgctactaaagaaaagcttatt
aagattttaaatagtaaggtaggagaactagctaaacaagataatgttcaaaaacagata
caggatttaagtagagaagaacttaatgagttatatggtgatgaaccacgtaactttgtt
aatggcgatcaagagcttaaattcttagctcgcagttatgttatgaagcaattacgtcca
gttcaaagagcgattgtacgtaatagatttttgagtattaataaacaatttgttcatttt
atgcgtaatattccagagttagttgatttatcaaaatttgatttaactctagatcaatgg
aataatgatgttgatatgacagtcaatcacttgaaaaatcataagttaacaatagcagat
gtaactatttacctatatttatatgacttgattacaggaaaacgtggcgaagtagatatt
aagcatgtttttattgatgaaattcaagattatacagcatatcagttagcatatttaaaa
tttggttttccacgtgctaaatttacaatgttaggtgatttaaatcaggctattttcacg
aaagaaaacagtcatacactgttggatgagctaggaacaatgtttgataaagataaaata
aaagttattcaattgacgcaatcatatcgttcaactcaacaaataacagattttactaaa
gaagtattagtraatggagaaaaggttacatcttttgctcgcaaaggaccattgccaact
attacaattgatagcgatgaagaaaaattagttaatgatgtagttatgcaattgcacaga
aatgatgcagaaaagatgactaccgcaattattggcaaaacattagctgaatgtgagaaa
ttgacagaggagttgaagcaaaagggtgctcaagttactttaattaagactgaaaaccaa
cgcttagttccaggaataattgtggtaccagcatttttagcaaaaggactagaatttgat
gctgtaataatgtggaatgctaacagaaataattatcatgatgaaagtgaaagacaatta
gtttatacaatttgttctagagcgatgtatagattagatatattcgctgttaaagaattg
acaccattaatggacagggtaaatccagaattgtatgaaatgttataa
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