Lacrimispora sinapis: VIG27_01540
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Entry
VIG27_01540 CDS
T10884
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
lsia Lacrimispora sinapis
Pathway
lsia03030
DNA replication
lsia03430
Mismatch repair
lsia03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lsia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VIG27_01540
03430 Mismatch repair
VIG27_01540
03440 Homologous recombination
VIG27_01540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lsia03032
]
VIG27_01540
03400 DNA repair and recombination proteins [BR:
lsia03400
]
VIG27_01540
Enzymes [BR:
lsia01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VIG27_01540
DNA replication proteins [BR:
lsia03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VIG27_01540
DNA repair and recombination proteins [BR:
lsia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VIG27_01540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
RNase_H_2
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
XIJ21566
LinkDB
All DBs
Position
321253..321960
Genome browser
AA seq
235 aa
AA seq
DB search
MVSSYVAVDLETTGLDPKKDKIIEIGAVLVLNGVIKDTYETFVNPYRKLEERITSLTGIR
DEQLESAPGIETVIGEFLDFAGKFPVLGHHVIFDYSFLKRAAVNGGHGFERQGIDTLKLA
RRFMPPEAKKNLKDACEFFEIKQEQSHRALADSKSAHFLYQELVRRFGSNEPEAFESQPL
IYKVKKEQPASNRQKEHLQDLLKYHKIVLSVQTDHLSRNEISRITDKIISQYGRI
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
gtggtttcatcctatgttgcggtagatttggaaacaacaggtctggacccgaaaaaagat
aagatcatagagatcggtgctgttttggttcttaacggagttataaaggacacttacgaa
acctttgtaaatccttaccggaagctggaggaacggataaccagcctgaccggaatccgg
gatgagcagttggaatcggcacctggaatcgaaacggtcatcggggaatttctggatttt
gccggaaaatttcctgtacttggccatcacgtcatttttgattacagctttttaaaacgt
gcggcagtcaatggaggccatggttttgaacggcagggaattgataccttgaagcttgca
agacggtttatgccgccggaagcaaagaaaaatttaaaagatgcctgtgaattttttgaa
atcaagcaggaacaaagccaccgtgcgctggctgacagtaagtctgcacattttttgtat
caggagctggtccgaagattcggcagcaacgagccggaagcatttgaatcacagcccttg
atttacaaggtgaaaaaggaacagccggcatcaaatcggcaaaaagaacacttgcaggat
ctattaaaatatcataaaatagttttatctgtgcaaacggatcatttatccagaaatgaa
atatcgagaatcacggataaaatcatatcacagtatggaagaatataa
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