Lacrimispora sinapis: VIG27_01610
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Entry
VIG27_01610 CDS
T10884
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
lsia Lacrimispora sinapis
Brite
KEGG Orthology (KO) [BR:
lsia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsia03019
]
VIG27_01610
Messenger RNA biogenesis [BR:
lsia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VIG27_01610
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
Cas3_HD
TraI_2
Motif
Other DBs
NCBI-ProteinID:
XIJ21580
LinkDB
All DBs
Position
338518..339462
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AA seq
314 aa
AA seq
DB search
MRYIESFREGMHVSDVFLCKNRQICLTKSGKEYGNVILQDKTGTIDAKIWDLGSPGIGNF
ETLDYVYIDADVTVFQNSNQLNVKRIRKAEEGEYTPGDYLPVSSKDIDLMYEELLGFIKS
LKNPYLKKLLESFFAEDPEFARTFKFHSAAKSVHHGFVGGLLEHTLSVVKLCDYYAGYYP
GINRDLLLTAAMFHDIGKTRELSVFPENDYTDDGQLLGHIMIGTEMVGERIRTIAGFPEK
TATELKHCILAHHGELEYGSPKKPALIEALALNLADNTDAKMETMVEVLKGAGDNTGWLG
FNRLMDTNIRKTTE
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgagatatattgaatcattccgcgaaggaatgcatgtttcagacgtatttttgtgcaaa
aacagacagatctgcctgaccaaatccgggaaagaatatggcaatgtcatactgcaggac
aagacaggcaccatagatgccaagatatgggatcttggctctccggggatcgggaatttt
gaaacgttggattatgtatatatagatgcggatgttacggtattccagaactccaatcag
ctgaatgtcaaaagaatcaggaaggcggaagaaggagaatatacacccggtgattatctt
ccggtatcgtctaaggacattgatctcatgtatgaggagcttcttggttttataaaatcc
ttgaagaatccatatttaaaaaagctgttggaaagcttttttgcggaagacccggaattt
gccaggacctttaagttccattccgcagcaaaaagcgtacaccatggttttgtgggagga
cttttagaacatacgttaagtgtggtaaagctgtgcgattattatgcaggctattatccg
ggaatcaaccgggacttacttctgactgcagccatgtttcacgacatcggcaagaccagg
gagctttctgttttcccggaaaatgattataccgacgacggccagctcttaggccatatc
atgatcggcacggagatggttggagaacggatccgcaccatagcaggtttcccggaaaag
actgccaccgagctgaaacactgcatcctggcccatcacggagaactggaatacggctcg
cctaaaaaaccggccctcatcgaagctctggcccttaatcttgcggacaatacggatgcg
aagatggaaaccatggtggaagttcttaaaggagcaggagacaacacgggctggctcggt
ttcaacaggctgatggataccaatatcagaaaaaccaccgaataa
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