Lacrimispora sinapis: VIG27_02140
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Entry
VIG27_02140 CDS
T10884
Name
(GenBank) RNA degradosome polyphosphate kinase
KO
K00937
polyphosphate kinase [EC:
2.7.4.1
]
Organism
lsia Lacrimispora sinapis
Pathway
lsia00190
Oxidative phosphorylation
lsia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsia00001
]
09100 Metabolism
09102 Energy metabolism
00190 Oxidative phosphorylation
VIG27_02140
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VIG27_02140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsia03019
]
VIG27_02140
Enzymes [BR:
lsia01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.4 Phosphotransferases with a phosphate group as acceptor
2.7.4.1 ATP-polyphosphate phosphotransferase
VIG27_02140
Messenger RNA biogenesis [BR:
lsia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
VIG27_02140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PP_kinase_C_1
PP_kinase_C
PP_kinase
PP_kinase_N
PLDc_2
RE_NgoFVII
Motif
Other DBs
NCBI-ProteinID:
XIJ21678
LinkDB
All DBs
Position
488548..490689
Genome browser
AA seq
713 aa
AA seq
DB search
MADINEIYYNPENYVNRELSWIEFNYRVLSEARDKNIPLFERLKFLSITASNLDEFYMVR
VASLKDMVHAKYTKPDIAGLKPSDQLEKISEKTHELVAVQYSTYNRSLLPALKQNGLRVI
INHEDLSEEEGSYADRYFERDVYPVLTPMAVDSSRPFPLIRNKTLNIAALLKKKSGEEEL
EFAMVQVPSVLPRIVKLPSKEKGMQAVILLEQIIERNMERLFLNYNVITSSPFRVMRNAD
LTIDEEEAVDLLEEIQKQLKKRQWGEAIRLEVEEKMDKQLLKILKRELNISSSDIFSIPG
PLDLTFLMKMYGLEGFDHLKEVPYVPQQVPRLMNEDDIFTNIRKGDILLHHPYETFDPVV
NFVKEAAKDPEVLAIKQTLYRVSGNSPIVAALAEAADNRKQVSVLVELKARFDEENNINW
AKKLEKAGCHVIYGLVGLKTHSKITLVVRREEDGIRRYVHLGTGNYNDSTAKLYTDFGLM
TCNPQIGEDATAVFNMLSGYSEPLHWNKLVMAPIWLRARFLKMIRREMKNARSEKPAHII
AKMNSLCDKEIIAALYEASCSGVKIQLIVRGICSLKAGVPGLSENISVHSIVGNFLEHAR
IFYFENDGSPEVYLGSADWMPRNLDRRVEIMFPVEEEALKERIINILKIQLEDNVKAHIL
LPDGTYEKPDKRGRVQRNSQEELCREAERSVNAELKKSNPQASRVFVPTESQN
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atggcagatatcaatgagatttattacaatcctgaaaattatgtaaatcgggaactgagc
tggatcgaatttaattaccgcgtactcagtgaagcgagagacaaaaacatacctctgttt
gaacggctgaaattcctaagtattactgcctccaatctggatgaattttatatggtccgt
gtcgcttctttaaaagacatggtccatgcaaaatatacgaaacctgatatagcagggtta
aaaccctcggatcagctggaaaaaatcagcgagaagacccatgagctggtagcggtacag
tattccacctataaccgttcccttttgcctgccttaaaacagaacgggcttcgtgtcatt
atcaatcacgaggatttaagtgaagaagaaggaagctatgcggaccgctattttgagcgg
gatgtttatccggtcctgactcccatggctgtggattcctcccgcccatttcctctcata
cggaataaaaccttaaatattgctgcgcttttgaagaaaaaaagcggggaggaagaactg
gaatttgccatggtccaggtgccaagcgttctgccgaggatcgtgaagctgccgtcaaaa
gaaaagggaatgcaggcggttatattgctggaacagatcattgagcggaatatggaacgt
ctgtttttaaattacaatgtaataacctccagtcccttccgggtcatgagaaatgctgat
ttgaccattgatgaagaagaagcggtagacttattggaagagatccagaagcagctgaaa
aagagacagtggggcgaagccattcgtctggaagtggaagaaaaaatggataagcagctt
cttaagattctgaagcgggaattaaacatcagctccagcgatatcttttccattcccggt
cccctggatctgacatttttgatgaagatgtacggattggaaggatttgaccatttaaaa
gaggttccttatgtgccccagcaggttccaagactgatgaacgaggatgatatttttacc
aacatccgaaagggtgatatactgctccatcacccttatgagacctttgaccctgtggta
aattttgtgaaggaggcggccaaggacccggaggttctggcaattaagcagaccctgtac
cgggtcagtggaaactcccccattgtagctgctttggcggaagccgcggataaccggaag
caggtctcggttctggtggaattgaaagcccgttttgacgaagagaataacatcaactgg
gccaaaaagcttgaaaaggcgggctgtcatgtgatctacggtctggtaggcttaaaaacc
cacagcaagattactctggtggtccgcagggaagaagacggaatccgccggtatgtccat
ttgggaaccgggaattacaacgattctacggcaaagctctataccgatttcggtctcatg
acctgcaatccccagatcggagaagacgcgaccgcggtatttaatatgctttccggttac
tcggaacctcttcactggaataaattagtaatggcccccatctggctgagagccagattc
ttaaagatgatccgccgggagatgaaaaatgcccgctcagaaaagccggctcacatcatc
gccaagatgaattctctctgcgataaggagatcattgcggctctttatgaggcttcctgt
tccggtgtgaagatccagctgatcgtgcggggaatctgcagcttaaaggcgggagttccc
ggtttaagcgaaaatatttccgtccattccattgtggggaatttcctggaacatgccaga
atcttttattttgaaaatgacggcagtcccgaagtctatcttggaagtgcggactggatg
cccaggaatctggaccggcgggtggagatcatgttccccgtggaagaggaagcattgaag
gaacgaatcataaatatccttaaaattcaattagaggataatgttaaggctcatatttta
ctgccggatggaacctatgaaaagccggataaaagggggcgggtccagagaaacagccag
gaagaattatgcagagaggcagagcgttcggtaaacgccgagcttaaaaaatcaaacccc
caggccagccgggtattcgttccgacagagagccagaattaa
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