Lacrimispora sinapis: VIG27_03680
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Entry
VIG27_03680 CDS
T10884
Name
(GenBank) hypothetical protein
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
lsia Lacrimispora sinapis
Pathway
lsia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VIG27_03680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsia03019
]
VIG27_03680
03110 Chaperones and folding catalysts [BR:
lsia03110
]
VIG27_03680
03029 Mitochondrial biogenesis [BR:
lsia03029
]
VIG27_03680
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lsia04147
]
VIG27_03680
Enzymes [BR:
lsia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
VIG27_03680
Messenger RNA biogenesis [BR:
lsia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
VIG27_03680
Chaperones and folding catalysts [BR:
lsia03110
]
Heat shock proteins
HSP60 / Chaperonin
VIG27_03680
Mitochondrial biogenesis [BR:
lsia03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
VIG27_03680
Exosome [BR:
lsia04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
VIG27_03680
Exosomal proteins of other body fluids (saliva and urine)
VIG27_03680
Exosomal proteins of breast cancer cells
VIG27_03680
Exosomal proteins of colorectal cancer cells
VIG27_03680
Exosomal proteins of bladder cancer cells
VIG27_03680
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Herpesvir_UL11
Motif
Other DBs
NCBI-ProteinID:
XIJ21969
LinkDB
All DBs
Position
818145..819539
Genome browser
AA seq
464 aa
AA seq
DB search
MIRQIRFEDGKSRIAEGIRSLCRALSLEGGILVKGTYCFSAAEVAKELEGEDLFMNQGIR
LACAAISEINEVTGCGTRETARMMGSLLSVCERKAASGINPVFLAKDLKQAADSLEAAVL
NGSFFSGKSKGELIGQITRDPETARMILKGTEAGELVVKESMYADTRLQITRGMHLDGPL
TVGESGTFSEVLVLIVNRPLSSFGELVPLLQKLGQQKLFILADQIEGEALSLLSANVKKD
RLHVWAMKAPGIGRRKEDIMGDVAVLTDTRVFDGMYPCSIEEIPLQMLGKANVLTAAGTY
TVIEGDADRDMVRNRIVDIKKKIGDPKTNYYDKQKLRERLAALNGTAPVLYAGGDTLSQS
KEEKRRIEYAVAYAQTIERYGIYHTKDLLSVSFKSEAEKMLAQVISKSLDGEEISTWLLV
LMLRKVCGLMVMWLTTGAVMVSTGYDREDLELIKNGVDIERLRG
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgatacgtcagattcgatttgaggacggaaaaagcaggatcgcagaaggaattagaagt
ctttgccgtgcgctttccctggaaggcggaattctggtaaaaggaacctactgtttttcc
gcggcagaggtggcaaaggaactggaaggagaagacttatttatgaaccagggaatcagg
ctcgcttgtgccgccataagcgagatcaatgaggttacaggctgcggaaccagagagacc
gcccgcatgatgggctctttgctttctgtctgtgaacgaaaagcggcttcgggcattaat
ccggttttcctggcaaaggatttaaaacaggcggcagactcactggaagcagccgtctta
aacggatcatttttttccggaaagtcaaaaggagagctgatcgggcagatcaccagggac
cctgaaactgcccgaatgatactaaaaggcactgaagccggggaactggtggtaaaggag
tccatgtatgcggacacaaggcttcagatcaccagaggaatgcaccttgacggtccgctt
accgtgggggagtctgggacgttttctgaggtgttggtcctgatcgtaaaccgtccgctg
tcctcctttggggaactggttcctctgcttcagaaattgggacagcaaaagctgtttatt
ctcgcagatcagattgaaggagaggccctgtcccttttgtctgccaatgtaaaaaaagac
cgtctccatgtgtgggcaatgaaagcacctggcatagggcggagaaaagaagatatcatg
ggggatgtggcagtcttaaccgatacaagagtgtttgatggtatgtacccatgctccata
gaggagatccctttgcagatgcttggaaaggcaaacgttttaacggcagcagggacgtac
acggtaatagaaggggatgctgaccgggatatggtccgtaaccgaatcgtagacataaaa
aagaaaatcggggatccaaaaaccaattattacgacaagcagaaactaagagaacggctc
gctgccctaaacgggaccgcaccggtgctttatgccggaggggatacactttctcagtcc
aaagaagaaaaaagaagaatcgaatatgccgttgcctatgcccagactatagagcgttat
gggatataccataccaaagacctgctttctgtttctttcaaatccgaagcagaaaaaatg
cttgcacaggtcataagcaaaagtctggacggggaagaaatcagcacctggcttttggta
ttaatgcttcggaaggtatgcggtctgatggtcatgtggctgacaacaggagcggtgatg
gtgagtacggggtacgaccgggaagatttggaactgataaaaaacggtgtggatatagaa
aggttgaggggttga
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