Lacrimispora sinapis: VIG27_08010
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Entry
VIG27_08010 CDS
T10884
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
lsia Lacrimispora sinapis
Pathway
lsia03030
DNA replication
lsia03430
Mismatch repair
lsia03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lsia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VIG27_08010
03430 Mismatch repair
VIG27_08010
03440 Homologous recombination
VIG27_08010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lsia03032
]
VIG27_08010
03400 DNA repair and recombination proteins [BR:
lsia03400
]
VIG27_08010
Enzymes [BR:
lsia01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VIG27_08010
DNA replication proteins [BR:
lsia03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VIG27_08010
DNA repair and recombination proteins [BR:
lsia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VIG27_08010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NI
HHH_6
tRNA_anti-codon
RNase_H_2
DEDDh_C
HHH_3
PCMT
7TM_transglut
Motif
Other DBs
NCBI-ProteinID:
XIJ22788
LinkDB
All DBs
Position
1747821..1752362
Genome browser
AA seq
1513 aa
AA seq
DB search
MTKKFLEVFPNLHITEELRELLNLVEVEKVTSTRDRSSIRIYLLSPRLIHKQNIYGLEKG
IKEQLFPSKRLTVKIIERFRLSEQYTPQKLLKAYRDSLLMELKNYSIIEYNMFRKAEYQF
PERDLLKMTVEDTIVTHEKAGELKRVLEKIFFERCGLPLEVQYEYVPPKVNGLAKQKELQ
MQREVEEIVSRTSLRVRSSNGEEVAPPSMADTGNLEAMAADYAADVPFVQDNQSSGLRMG
GKKDNGKTGESDSGKKEFAKKEWKDYKKGGNFYTKRSDNPDVLYGRDFDGEIIEIENIDG
EIGEVTIRGKILTVDSRELRSGKTIMIFDVTDFTDTITVKIFAKEEQLDDLKAAVVQGSF
IRIKGVTTIDKFDGELTLGSVVGIKKSEDFTGKRMDNSLEKRVELHCHTKMSDMDGVSEV
KDIVKRAKKWGMPAIAITDHGCVQSFPDANHALDKGDNFKLIYGVEGYLVDDLKQLVENS
RNQKLSDTYVVFDIETTGFSSSKNRIIEIGAVKIQDGAVIDRYSTFVNPDVPIPFEIEKL
TGINDNMVLSYPGIREILPQFLEFCSDAVLVAHNASFDVSFIAYNASQLGLEFDPTVIDT
VALARLLLPNLNRYKLDTVAKALNISLENHHRAVDDAGCTALIFAAFVKMIRDRGVETLD
ELNQLNTMSASIIKKLPTYHVIILAANDVGRVNLYRLVSYSHIDYYARRPRIPKSILNQY
REGLIIGSACEAGELYQALLRGVPDAEIAKLVNFYDYLEIQPLGNNGFMLRDEKSVVKSE
QDLIDINKKIVSLGEQFGKPVCATCDVHFLDPEDEVYRRIIMAGQGFKDSDDQAPLYLRT
TEEMLKEFEYLGPNKAEEVVIKNTRKIADMCEKISPVRPDKCPPVIENSDEDLRQICYDK
AHAIYGENLPTIVTERLERELNSIISNGFAVMYIIAQKLVWKSNEDGYLVGSRGSVGSSF
VAYMAGITEVNSLSPHYYCKSCHYYDFDSEEVKKFSGMAGCDMPDKICPVCGHPLEKDGF
DIPFETFLGFKGDKEPDIDLNFSGEYQSKAHDYTEVIFGKGQTFRAGTIGTLADKTAFGY
VKNYFEEHGVRKRNCEINRIVQGCVGVRRTTGQHPGGIIVLPHGEEIYSFTPVQRPANDM
TTMTVTTHFDYHSIDHNLLKLDILGHDDPTMIRMLQDLIGFDPVKDIPLDSKEVMSLFQD
TSALGIMPEDIGGCKLGALGVPEFGTDFAMQMLIDTQPKYFSDLVRIAGLAHGTDVWLGN
AQTLIQEGKATIQTAICTRDDIMIYLISMGMEEGLSFSIMESVRKGKGLKEEWEKEMIAH
GVPDWYIWSCKKIKYMFPKAHAAAYVMMAWRIAYCKVFYPLAYYAAFFSIRANGFSYELM
CQGREKLEHYLADYRKRMDTLSKKELDTLRDMRIVQEMYARGYDFIPIDIYRAKARHFQI
IDGKLMPSLSSIDGLGEKAADAVVDAVKDGPFLSREDFRNRTKVSKTVCDLMGDLGLLGE
LPESNQLSLFDLG
NT seq
4542 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaaaatttttggaagtatttccaaatttacatattacagaagaattgcgagag
cttttaaatctggtggaggtggagaaagtcacttccaccagggatagaagctctattcgt
atttatcttttaagcccaaggctgatacataaacagaatatctatggactcgaaaagggg
attaaagaacagctttttccctctaagcggcttactgtaaaaattattgaacggttccgg
ctgtccgaacagtatacacctcagaaacttttaaaggcatacagggacagcctgttaatg
gagcttaaaaattacagcatcattgaatataacatgttccgaaaagctgagtaccagttc
ccggaacgggatcttcttaagatgaccgtggaagataccattgtcacccacgaaaaggca
ggtgaattaaagcgggttctggaaaaaatcttttttgaacggtgcggcctgcctttggaa
gtgcagtacgaatatgtaccccccaaggtcaatggactggcaaagcagaaagaactgcag
atgcagagggaggtggaggaaatcgtaagccgtacctctcttcgtgtgagatcatcaaat
ggtgaggaagtggctccgccctctatggcagacaccggaaatctggaagccatggcggcg
gactacgcggcggacgttccctttgtacaggataatcagtcatcagggctgcgtatggga
ggcaaaaaagacaacgggaaaacaggtgagtctgattccggtaaaaaagaatttgccaaa
aaggaatggaaggattacaaaaagggcggaaacttttatacaaaacgttcggataatccg
gatgtattgtatggccgtgattttgatggtgagattattgaaatcgaaaatattgatgga
gaaatcggagaagtaaccattcggggtaagattttaacggttgacagccgggaattaaga
agcggaaaaaccattatgatttttgacgtgacagattttaccgataccatcaccgtaaag
atatttgccaaagaggagcagctggatgatttaaaggctgcggttgtacagggaagtttt
atacggatcaagggcgttaccaccattgataaatttgatggagagctgactcttgggtct
gtggtaggaattaaaaaatcagaagattttactggtaaaaggatggacaacagtctggag
aaaagagtggagcttcactgtcatacgaagatgagcgatatggatggagtctccgaggta
aaagatattgtgaagagggcaaaaaagtggggaatgcctgccattgccattacggatcat
ggatgcgtccagtcctttccggatgccaaccatgccctggataagggagataatttcaaa
ctcatttatggcgtggaaggatatctggtggatgatttaaagcaattggtagaaaattca
agaaaccagaaactatcggatacctatgtggtctttgatattgagaccaccggctttagc
tcttctaaaaaccggattatagaaataggtgcagtaaaaatacaggacggggcagtgatc
gaccggtacagtacctttgtaaacccggatgtgcccattccctttgagatcgagaagctg
accggaatcaatgacaacatggttctttcctatcccggaatccgggaaatccttcctcag
tttctggagttctgttcggatgcggttttagttgcccacaatgcatcttttgatgtgagc
tttattgcctataatgcttcccagcttggtttggagtttgatcctacggtgatagatacg
gttgcacttgcaagacttctgcttcccaatttaaaccgttataagcttgatacggtagcc
aaagccttaaatatttctttggaaaatcaccatagagcagttgatgatgcaggctgtacg
gcacttatctttgctgcgtttgtaaagatgatccgggacaggggagtggagaccttagat
gaactcaatcagctgaataccatgtcggcaagtatcattaagaagcttcccacctatcat
gttattattttggccgccaatgatgtgggaagagtaaatctttaccggctggtgtcctat
tctcatattgattattacgccagaaggccgcgaattcccaaaagtattttaaatcagtac
cgggaagggcttatcattggttccgcctgtgaagccggagaactgtaccaggctcttctg
cggggagtaccggatgcggaaattgcgaagctggtgaatttctatgattatctggaaata
cagcctctaggcaacaatgggtttatgctgcgggatgaaaagagtgtggtcaagtcggaa
caggatttgattgacataaataaaaaaatcgtgtcattgggagaacagtttggaaagccg
gtctgtgccacctgtgatgtgcatttcctggacccggaggatgaggtctaccggagaatc
atcatggctggacaaggctttaaggattccgatgatcaggcacctttgtatttgagaacc
acggaagagatgctgaaggaatttgaatatttaggtcccaataaagcggaagaggtcgtt
attaaaaacaccagaaagatcgcagatatgtgcgagaagatatctcctgtaaggccggat
aaatgtcctccggtcattgaaaattccgatgaagacttaagacagatctgctatgataag
gctcatgccatatatggagaaaatcttcccaccattgtaacagagcgtctggaaagggag
ctgaactccattatatccaatggatttgcggttatgtatatcattgcccagaagctggtt
tggaaatccaatgaggatggctatctggtggggtcccgtggttccgtcggctcttccttt
gtggcttacatggcgggtattacagaggttaattccttaagtcctcattattattgtaag
tcctgccattattacgattttgattcggaagaggtgaaaaagttttccggtatggcaggg
tgtgatatgccggataaaatctgtccggtgtgcggacatcccctggaaaaggacggtttt
gatatcccgtttgagacgttcctgggctttaagggagataaggaaccggatattgactta
aacttctccggagagtatcagagcaaggcgcatgactacacggaggtcatcttcggcaaa
ggtcagacgttccgcgccggaacaatcggtacgctggcggataagacggccttcggctat
gtgaaaaattattttgaagagcatggagtgagaaaacggaactgtgagatcaaccggatc
gtacagggctgtgttggcgtgagacggacaaccgggcagcatccgggtggtattattgtc
cttcctcatggggaggagatctattcctttacaccggtccagcgtccggccaatgatatg
acgaccatgaccgtaaccactcattttgattaccactccattgaccataacctgctgaag
cttgatattctggggcacgatgatccgaccatgatccgtatgcttcaggacttgattggc
tttgatccggttaaggatatccctctggacagcaaggaggtcatgtccttgttccaggat
acttctgcacttggaatcatgccggaggatattgggggatgcaaattgggtgcccttggt
gtaccggaattcggtacggattttgcgatgcagatgttaattgatacccagcctaagtat
ttttcggatctggtgcgcatcgcaggtctggcccatggtacggatgtatggcttggaaat
gcccagacgctgattcaggaaggtaaggcaaccattcagaccgcaatctgtacccgggat
gatattatgatatatcttatttctatgggaatggaagagggactgtccttttccatcatg
gagagcgtacgaaaaggaaaagggctaaaagaagaatgggaaaaagaaatgatcgctcat
ggagtgcctgactggtatatctggtcctgtaagaaaatcaaatacatgttccccaaggct
catgccgcagcttatgttatgatggcatggcgtattgcatattgcaaagtgttttatcct
cttgcatattatgcggcctttttcagcatccgggcaaatggattcagttatgaattgatg
tgtcagggacgagaaaagctggagcattatctggcggattaccggaaaagaatggatacc
ctgtccaaaaaggaactggatacccttcgtgatatgaggatcgtacaggagatgtatgcc
agagggtatgactttattcccattgacatctaccgggccaaggcacggcattttcaaatc
attgacggaaagctgatgccttctttaagcagcattgatggtttaggagaaaaggcggcc
gatgcagtggtggatgcggtcaaagacggccccttcttatccagagaagattttagaaac
cgtacgaaagtcagcaaaacggtatgcgatttaatgggagatttagggcttcttggagaa
ttgcccgaatccaaccagctttctctttttgatcttggctaa
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integrated database retrieval system
