Lacrimispora sinapis: VIG27_08460
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Entry
VIG27_08460 CDS
T10884
Symbol
abc-f
Name
(GenBank) ABC-F type ribosomal protection protein
KO
K19350
lincosamide and streptogramin A transport system ATP-binding/permease protein
Organism
lsia Lacrimispora sinapis
Pathway
lsia02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
lsia00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
VIG27_08460 (abc-f)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lsia02000
]
VIG27_08460 (abc-f)
01504 Antimicrobial resistance genes [BR:
lsia01504
]
VIG27_08460 (abc-f)
Transporters [BR:
lsia02000
]
ABC transporters, eukaryotic type
Other subfamilies
Macrolide exporter
VIG27_08460 (abc-f)
Antimicrobial resistance genes [BR:
lsia01504
]
Gene variants
Macrolide resistance genes
Transporters
VIG27_08460 (abc-f)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
SMC_N
KAP_NTPase
AAA_29
AAA_22
Dynamin_N
MobB
AAA_15
Motif
Other DBs
NCBI-ProteinID:
XIJ22870
LinkDB
All DBs
Position
1842562..1844091
Genome browser
AA seq
509 aa
AA seq
DB search
MSLIQVTDLSFTYEGGYDPVFEHVSFQIDTDWKLGFTGRNGRGKTTFLNLLMKRYEYSGR
IISSVEFEYFPFPVPDQERDTLEIIDSILGDYEQWQLKRELSRLQVAEEVLYRPFFTLSN
GERTKILLAALFLKEDRFLLIDEPTNHLDRDARKLVSRYLSSKKGFILVSHDRKFIDDSV
DHILSINKTNIEVQKGNFTSWYENKQKQDQFEQSENERLKKGIRRLESAARQSKEWADHA
ESTKLGKKSMLHEKSVDSRAYIGEKSRRMQMRRKNLEQRQERAIDEKNGLLKNMEEAEPL
KLFPQTHHSNRILSLNKVVPCFDRPVCKPVSFQLEQGQRISLQGKNGSGKSSIIKLILGK
EASGIQVSYEGTIETAGGIKISYVSQDSSFLKGSLTEFAKESGIEDTLFKAVLRKLDFSR
EQFEKQMETYSEGQKKKVLIARSLCEQAHLYLWDEPLNFIDVYSRIQIEDLILEFQPTMV
FVEHDEAFTSHVSTHRVQLEQVDFGLCNQ
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttaatacaagttacggatttgtcattcacttacgagggtgggtacgatccggta
tttgagcatgtatcgtttcagattgataccgattggaagctgggatttacagggagaaat
ggaagagggaaaacgacctttttaaatctgttaatgaaacgctatgaatactcgggaagg
attatttccagcgtggaatttgaatattttccatttccggtaccagaccaggagagagac
actttggaaattatagattctattctgggggattatgagcaatggcagcttaagagggaa
ctttccagattacaggttgcagaagaggtgctgtaccgccccttttttacgttgtcaaat
ggggagcgtaccaaaatactgctggctgctctttttttaaaggaagaccgtttccttttg
attgatgagcctaccaatcatttggacagggatgcaaggaaattggtcagccggtattta
agcagcaaaaagggatttatactggtgtcccatgacagaaagtttattgatgactcggta
gatcatatactttccatcaataaaaccaatatagaagtgcaaaaaggtaactttacttcc
tggtatgaaaataaacagaaacaggatcagtttgagcaatcagaaaatgaacgtctgaaa
aaaggaatccgccgtttggaatctgcggcaaggcagtcaaaagaatgggcggatcatgcg
gaatcgacaaaattaggaaaaaaatctatgctgcatgaaaagtctgttgattccagggct
tatataggagagaaatccagacggatgcagatgcgcagaaagaatctggaacagagacag
gaacgggccattgacgaaaaaaatggactgctgaagaatatggaagaagcagaaccatta
aaactttttccccaaacccatcatagcaaccggatcctgtccctgaataaagtagttccc
tgttttgacagaccggtatgcaaaccagtgagctttcagctggaacaggggcagcgcatt
tcccttcaggggaaaaacggaagcggaaaatccagtatcataaaactgattctgggaaaa
gaagcatccggcatccaggtatcctatgagggtaccatagaaacggccggcggtataaaa
atttcctatgtgtcccaggattcttcctttttaaaaggcagtctgacggaatttgcaaaa
gaatccgggatagaagatactctgtttaaagcggttcttagaaaattggatttttccagg
gaacagtttgaaaagcagatggaaacatacagcgagggacaaaagaaaaaggttctcatt
gcccgcagtctttgcgaacaggcccatctgtatctgtgggacgaaccgttgaattttatt
gatgtatattccagaatacagattgaagatttgattctggaatttcagcctaccatggtt
tttgtggagcatgatgaagcatttaccagccatgtctccacccatagggtgcagctggaa
caagtggattttggactttgcaatcaatag
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