Lacrimispora sinapis: VIG27_09590
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Entry
VIG27_09590 CDS
T10884
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lsia Lacrimispora sinapis
Pathway
lsia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VIG27_09590 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsia03019
]
VIG27_09590 (rnr)
03016 Transfer RNA biogenesis [BR:
lsia03016
]
VIG27_09590 (rnr)
Enzymes [BR:
lsia01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
VIG27_09590 (rnr)
Messenger RNA biogenesis [BR:
lsia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VIG27_09590 (rnr)
Transfer RNA biogenesis [BR:
lsia03016
]
Prokaryotic type
tRNA degradation factors
VIG27_09590 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Motif
Other DBs
NCBI-ProteinID:
XIJ22955
LinkDB
All DBs
Position
complement(2077071..2079173)
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AA seq
700 aa
AA seq
DB search
MLLKLIEDPAYVPMKLKEIAILLDVPKEQREELKEVLDALLSEGKIGISQKGKYGKPELG
SVAGIFCGHPKGFGFVSVEGMDQDVFIPEEKTGGALHGDTVLISAESKPGNGKRAEGHVV
KVLVHANEEIIGFYQKNKNFGFVIPDNQKLSKDVFVPQGKDMGAVNGHKVVVRVTDFGGP
GRKPEGIITEILGHVNDPGTDILSIVRAYGLAEEFPDSVMKQVAAVPDHVDGKDMQGRLD
LRDLQTVTIDGEDAKDLDDAITITKKGSVYTLGVHIADVTNYVTEYSPLDEEALKRGTSV
YLVDRVIPMLPHKLSNGICSLNQGEDRLALSCIMDIDETGDVIGHRIAETVINVDRRMTY
TAVNAIVTDRDEAVMKEYEAFVPMFLQMKELADILREKRKKRGSIDFDFPETKVILDERG
KPLEIRPYDRNAATKIIEDFMLMANETVAEDYFWQEIPFLYRTHDNPDPEKMKSLATLIN
NFGYSIRLHNGDVYPKEVQKLLANAEDTPEEALISRLALRSMKQAKYTVTNTGHFGLAAK
YYTHFTSPIRRYPDLQIHRIIKENLRAGLSDKRISHYDKILGQVSVQCSAMERRADEAER
ETIKLKKCEYMSKYIGEAFDGVISGVTNWGLYVELPNTVEGLIHINQLQDDYYIFDEEHY
ELVGEMTRKTYKLGQPIRVIVENTDKLLRTIDFVPAKDFE
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgcttttaaagctgattgaagaccctgcctatgtgccgatgaaattaaaggagatcgcc
atactccttgacgttccaaaggagcagagagaagagttaaaagaagtgcttgatgctctg
ctttccgaaggaaagatcggcatatcacaaaagggcaaatatggaaaaccggagcttggg
tctgtggcaggtattttttgcgggcatcccaaaggctttggatttgtttcggtagaagga
atggatcaggatgtatttattccggaggaaaaaacaggaggcgctcttcacggagacacg
gtgcttatatctgcagaatcaaaacctggcaacgggaaaagagccgaaggccatgtggtc
aaggtattggtacacgccaatgaagagatcatcggcttctaccaaaaaaataagaatttc
ggatttgtgatcccggataaccagaagctttcaaaggacgtgtttgtgcctcagggaaaa
gatatgggggcagtcaacggccataaagttgtggtgagagtcaccgatttcggcggaccg
ggacgtaagccggagggcattattacggaaatattaggacatgtcaatgaccccggaaca
gatattttatccattgtccgtgcctatggactggcggaagaatttccggacagcgtcatg
aagcaggtggctgcagttcctgaccatgtggatggaaaggacatgcagggacggctggat
ctgcgtgatttacagacggttaccattgatggggaagatgccaaggatcttgatgatgcc
attaccataacaaagaaaggcagcgtctatacattgggagtccatattgccgatgtgacc
aattacgtgacggaatacagtccccttgatgaagaggcgttaaagcgggggaccagtgtg
taccttgtagacagggtcattcccatgctgcctcataaactgtcaaatggaatctgctcc
ttaaaccagggagaagaccgtctggcactcagctgcatcatggacattgatgaaacagga
gatgtcattggtcacagaatcgcagaaactgtgatcaatgtggaccgcagaatgacctac
accgcagtgaatgcaattgtaacggaccgggatgaagcggtaatgaaagaatatgaagca
tttgttcctatgtttttacagatgaaagagctggcggatattcttcgggagaaaaggaag
aaaagagggtccattgactttgatttcccggagacaaaagtcattctcgatgaacgggga
aaaccactggaaatcagaccttatgaccgtaatgccgcaacaaagatcattgaagatttt
atgctgatggccaatgagaccgtggcggaagactacttctggcaggaaattccgttcctg
taccggacccatgacaacccggacccggaaaaaatgaagagcctggcgaccctgatcaat
aactttggttattccatccggttacacaacggggatgtgtatcccaaagaggttcaaaag
ctccttgccaatgcggaggatacgccggaagaggctttgatcagccgtttggctctccgg
tccatgaagcaggcaaaatataccgtgacaaataccggacatttcggactggctgccaag
tattatacgcattttacgtctcccatccgaagatatccggatctgcagatccaccggatc
atcaaagagaatttaagagccggcttaagcgataagaggatcagccactatgataagatt
ttaggtcaggtgtccgttcagtgttctgcgatggagagaagagcggatgaggcagaaaga
gaaacgattaagcttaaaaaatgcgaatatatgtcgaaatatattggagaagcctttgat
ggagtgatctccggtgtgacaaactggggactttatgtggagcttcccaatacggtggaa
ggtctgatccatatcaatcagcttcaggacgattattatatttttgatgaagagcactat
gagctggtgggagagatgacaagaaagacttataagctgggacagcctatccgggtcatt
gttgagaatacggataagcttttgcgtaccatcgactttgttccggcaaaggattttgag
taa
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