Lacrimispora sinapis: VIG27_11555
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Entry
VIG27_11555 CDS
T10884
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lsia Lacrimispora sinapis
Pathway
lsia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VIG27_11555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsia03019
]
VIG27_11555
Enzymes [BR:
lsia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VIG27_11555
Messenger RNA biogenesis [BR:
lsia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VIG27_11555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XIJ20173
LinkDB
All DBs
Position
complement(2484776..2486080)
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AA seq
434 aa
AA seq
DB search
MQFKDLNIMPDIIKALEKENYDIPTPIQEEAIPVVLSGRDLLGCAQTGTGKTAAFAIPTI
QLLREAKVSHQSRQNIRALVVTPTRELALQIYESFNTYGKFTDLKCCVVFGGVSQKPQEE
KLKLGVDILVATPGRLLALMDQKIINIEHIKIFVLDEADRMLDMGFIHDVKRIIAKTPAK
KQTLLFSATMPPDIARLAGTILKNPAKIEITPVSSTVDTIKQYLYFVDKSNKKDLLLHIL
EDKNIVSALVFTRTKHGADRLMRQLSKNNVRAQAIHGDKSQGARQNALNNFKNKTLRILI
ATDIAARGIDIDELTHVINFDLPDTPETYVHRIGRTGRAGLEGTAISFCDFDEKGQLDDI
ERLIGKRLTEIKDHPYPLKNNFPAIKVVQPRRGAVHTASANSAVSPKKKFRMTADGTLKE
KRSFNKFSSRDKKR
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttaaagatttaaatattatgcctgatattataaaggcgctggagaaagaaaat
tatgatattccgactccgatacaggaagaggcaatccctgttgtactaagcggaagggat
ttacttggatgcgcccagacaggtaccggaaaaacggctgcatttgcaataccaacgatt
cagctgctcagggaagcaaaagtgtctcatcagtcaaggcagaatatcagagcgttggtc
gtaacaccaaccagggagctggccctgcaaatttatgaaagttttaatacctatggaaaa
ttcactgatttaaaatgctgcgttgtctttggcggcgtgtctcaaaagccccaggaagag
aaattaaaactaggagtggatatccttgtggcaacaccgggcagattgctggccttaatg
gatcagaagatcataaatatagagcatattaaaatatttgtattagacgaagcggaccgt
atgctggatatgggatttattcacgatgtaaagcggatcatcgccaaaacacctgccaaa
aagcagacattgcttttttccgctaccatgccgccagatatcgccaggcttgccggtacg
attttaaagaatcctgcaaaaatagagatcactccggtatcatcgaccgtggacaccatc
aaacagtatctttattttgttgataaaagcaataagaaggatttgcttttgcacatttta
gaagataaaaatatagtttccgcactggtttttacacgcaccaaacatggagcggaccgg
ctgatgaggcaattatctaaaaataatgtaagggctcaggcaatccatggggataagtcg
cagggagcgcgtcagaatgctttaaacaattttaaaaataaaacgctgcgaatattgatt
gcaacagatattgcggcaagaggaattgacattgatgagctgactcatgtaattaatttt
gatttgccggatacaccggagacctatgtacaccgcattggaagaacaggcagggcggga
cttgaggggactgcaatctctttctgtgatttcgacgaaaaaggacagcttgacgatatt
gaaaggttaattggaaaaagattaacagagatcaaagatcatccataccctctaaagaat
aatttccccgccataaaggtagtacagccaagaagaggagcagtgcataccgcttccgca
aatagcgctgtgtcacctaagaagaaatttcggatgacagcagacggaactttaaaagag
aaacggagttttaataaattttcttccagggacaaaaaacggtaa
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