Lacrimispora sinapis: VIG27_12175
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Entry
VIG27_12175 CDS
T10884
Name
(GenBank) SMC family ATPase
KO
K03546
DNA repair protein SbcC/Rad50
Organism
lsia Lacrimispora sinapis
Brite
KEGG Orthology (KO) [BR:
lsia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsia03400
]
VIG27_12175
DNA repair and recombination proteins [BR:
lsia03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VIG27_12175
Archaeal homologous recombinant proteins
VIG27_12175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
AAA_27
T2SSE
EF_EFCAB10_C
AAA_21
ABC_ATPase
nSTAND3
DUF2937
Motif
Other DBs
NCBI-ProteinID:
XIJ20280
LinkDB
All DBs
Position
complement(2610167..2613325)
Genome browser
AA seq
1052 aa
AA seq
DB search
MKPLKLIMSAFGSYGGTEIVDFEKISHGIFLITGDTGAGKTTIFDAVSFALFGETSGQKR
EPSMMRSQYAPEDQETYVSLTFSERGEVYEINRSPSYTRVSKRKNKNGEYTSVLVPAKAS
LFLPDGSEYPGNLRDINVKLQEIIGVDQNQFSQIAMIAQGDYLKLLHASSKERKEIFSRI
FNTGIFSRIQMKLKDKNHLYYGKLEDNRKLCIHELRHMEFLEDSKYHSDWQELLEFKETK
TEEIRDFLNKVLEEIREKEQILHEEQEQTGKQLLETKSHLSLAEEINQLFDALKNAQNSV
MLLEDQKEAWQQKRERLIRAQMAEKISGAAGQLSEKNRDYENSAQRTERLKTELESLVQT
LETVKIEAEERKKAADREIPGLQANLNRLQEAMPLYARWKEARKEYEQLKKEEREADTLL
KGFETELTECKNRIHLHESSKEAVEKTANELAAVIQRNHELTERQQALKNLLAAWKDFLT
ARVKTEQCQAAAETAQKDYMQAEDTYNHRYNVFLAHQAGIMAETLIEGKPCPVCGSTHHP
EKAGLSHEPVTQEMVEQAKKARNRAEELRSIAVEASIKALESCRHQEEYIKKESKKWLKD
DVSFSQLENCLKEEIKQGELLLAEVKEKETASKEAGRCLKELVEYIKADRKKMAELEPQI
EGARNTWQEKNLKAAASLVQINQWKERLPYPEEKEASSQIKWLENTINELQKSVDSAVEQ
YRHMAEAVKEKNGRLSSEMENLESRKLLAKQAAEEYKEALKAMGFETEEAYLKAKQPAQT
MDQWKTEIEKYEKDLLRSRAILEEYLKQTKGRERIDLLPWKEKADRLQEKQKQLQKEETK
IAGIHSKMKQAYETLNRLWKEREQLEEEYVLYHNLYRTANGKLTVSLDFQTYVQRQYFNQ
MIQAANRRLKEMTDGQFLLKCREFESLGKQGEVGLDLDVYSMATDKVRDVKTLSGGESFM
AALAMALGMSDIIQRTAGHVSMDALFIDEGFGSLDEESRMKAVRILRALAGERRLIGIIS
HVTELKEQIGKKLIVKKNEKGSRILWDLDRIP
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgctgaaattgatcatgtccgcgtttggttcctatggaggaacagagatcgtg
gattttgaaaagatcagtcatggaatctttctcattacgggagatactggggctggaaag
accaccatatttgatgccgtttcctttgctctttttggagaaaccagcggacagaagcgg
gagccatccatgatgcgcagccagtatgctccggaggatcaggagacttatgtttctctt
acattttctgagcggggagaagtttatgagatcaacagaagtccctcctatacccgggtc
agcaaaaggaaaaataaaaacggagagtataccagcgtgctggtaccggcaaaagcatct
ctgtttcttcccgatggatcggaatatccaggtaatttacgggacatcaacgtaaagctg
caggagatcattggtgtggatcagaatcagttttcccagatcgccatgatcgctcaggga
gattatttgaagctgcttcacgcatcatcaaaggaacgcaaagagattttttccagaatt
ttcaataccggtatcttcagccggattcagatgaaattaaaggataaaaatcatttgtat
tacggaaaactggaagacaacagaaagctttgtatccatgagctgaggcatatggagttt
ttagaggacagtaagtatcattcggactggcaggaacttttggagtttaaagaaacaaag
actgaggaaatcagagatttcttaaataaagtcctggaagagattcgggaaaaagaacag
atacttcatgaggagcaggaacagacgggaaaacagctattggaaaccaaaagtcatctc
agtcttgcagaagagattaatcaattatttgatgcgctgaaaaatgcccaaaacagtgtc
atgcttttggaggaccagaaggaagcctggcagcaaaagagggagcgcctaataagagcc
cagatggctgagaagataagcggagccgccggacagctgtcggaaaaaaacagagattat
gaaaactccgcgcaaaggacagagcggttaaaaacagaactggaatccctggttcaaaca
cttgagacggtgaaaatagaagcagaggaacgtaaaaaagcagccgacagggaaattcca
ggtctacaggccaatttaaaccgtctccaggaagccatgcccctttatgccagatggaaa
gaggcacggaaggaatacgagcagctgaaaaaggaagaaagagaagcagacaccttatta
aagggatttgaaacggagcttacagaatgtaaaaaccggatccaccttcatgagtcctca
aaggaagcggtggagaaaacggcaaatgaactggcagccgtcattcagagaaaccatgaa
cttacagaacggcagcaggctctaaaaaatcttctggccgcatggaaggattttttgacg
gcccgggtaaaaacggaacagtgtcaggcagcggcagagacagcccaaaaggattatatg
caggctgaagatacttacaatcacagatataacgtatttttagcccatcaggcaggaatt
atggcagagactttgatcgaaggaaaaccttgtccggtctgcggttccacccatcatccg
gaaaaagccggtttgtctcatgaaccagtcacccaggaaatggtggaacaggcaaaaaaa
gcgcgaaacagggcagaggaacttcgctccattgcggtggaagccagcataaaagcatta
gaaagctgccgccaccaggaagaatacataaagaaagaatcgaaaaaatggctgaaagac
gacgtgtccttctctcagttggagaactgtttgaaagaggaaataaaacagggggagctt
ttgctggctgaggtaaaagaaaaggagacagcttcaaaagaagctggccggtgtctcaaa
gaacttgtggaatatataaaggccgaccggaaaaaaatggctgaactggagccccaaata
gaaggagccaggaatacctggcaggaaaagaatttaaaagcagcggcgtctctggtacaa
ataaaccaatggaaagaacggctgccctatccggaagaaaaggaggcaagcagccagata
aaatggctggaaaacacaattaatgagcttcaaaaatcagtggattctgcggtggaacaa
taccgccatatggcagaagcggtgaaagaaaaaaatggccgcctttcttctgaaatggag
aacctggaatcaagaaaactgctcgcaaagcaggcggcagaggaatacaaagaagcatta
aaagccatgggctttgaaaccgaagaagcgtatctaaaagcaaagcagccggcgcaaacc
atggaccaatggaaaacagaaattgagaagtacgaaaaggatctgttaagaagccgggcc
attctggaagaatacttaaaacagaccaaagggcgggagcggatcgaccttcttccctgg
aaggaaaaagcggaccgtcttcaggagaagcagaagcagctgcaaaaagaggaaaccaag
atagccggaatccacagcaaaatgaaacaggcttacgaaaccctgaatcgtttgtggaag
gaaagagagcagctggaagaagaatatgtgctgtatcataacctttaccggacggccaat
ggaaaattaacggtcagcctggattttcagacctatgtccagcggcagtatttcaatcag
atgatacaggcagctaacaggcggttaaaagagatgacggatggacaatttctgcttaaa
tgcagagagtttgaatcacttggaaagcagggggaggtcggtctggatcttgacgtgtac
agcatggcaacggataaggttcgggatgtaaagaccctttccggcggcgaatcctttatg
gcagctttagccatggcccttggcatgtcggatatcatacagaggactgccggtcatgtg
tccatggatgccctttttattgatgaggggtttggttccttggatgaagaatccagaatg
aaagcagtgcgaatacttagagcgcttgccggagaacgccggctcatcggtattatttct
catgtgacagaattgaaagaacagattgggaaaaagctcattgtaaagaaaaatgaaaaa
ggaagcaggattctgtgggatttggacagaattccataa
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