Lacrimispora sinapis: VIG27_12190
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Entry
VIG27_12190 CDS
T10884
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lsia Lacrimispora sinapis
Pathway
lsia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VIG27_12190 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsia03019
]
VIG27_12190 (recQ)
03400 DNA repair and recombination proteins [BR:
lsia03400
]
VIG27_12190 (recQ)
Enzymes [BR:
lsia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VIG27_12190 (recQ)
Messenger RNA biogenesis [BR:
lsia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VIG27_12190 (recQ)
DNA repair and recombination proteins [BR:
lsia03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VIG27_12190 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
Alveol-reg_P311
Helicase_Sgs1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
XIJ22979
LinkDB
All DBs
Position
complement(2615788..2617623)
Genome browser
AA seq
611 aa
AA seq
DB search
MDKFQALKHYFGYDRFREGQETLIDGILKGKDALGIMPTGSGKSLCFQIPALMMEGITLV
ISPLISLMKDQVTTLNQAGIHAAYLNSSLTANQYYKALAYAREGRYPIIYVAPERLMTEQ
FLDFALHTKISMVAVDEAHCVSQWGQDFRPSYLKILDFIEKLPERPVISAFTATATKEVR
EDVIDILMLREPVIVSTGYDRPNLYLGVQTPKDKYATLKNYVECHPNQCGIIYCLTRKLV
EEVCDKLNADGFSATRYHAGLSDAERRKNQDDFIFDRNTIMVATNAFGMGIDKSNVRFVI
HYNMPKNLESYYQEVGRCSRDGEPGECILLYSGQDVVTNQMFVDNNQDNQELDPLTRRIV
IERDRERLKKMTFYSFTNECLRDYILRYFGEYGENYCGNCSNCISQFESVDVTAISKALI
GCVESSRQRYGTTVIIDTVHGANTAKIRNYRMNENPYYSSLAKVPSYKLRQVMNHLFLND
FLEVTNDEYAIVKLTEKSKAILEDQETVVMKMAKEQEPVPKEKNSKKMKKPNGAAAELTK
EDEIIFEKLRNLRLKIAKEEKVPPYIVFSDKTLLHMAVIKPKTKEEMLTVSGVGEFKVEK
YGNTFLEIFKL
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggataaatttcaggcactaaagcattatttcggttacgatcgtttccgggaaggtcag
gagacgctcattgacgggattctgaaaggaaaagacgcccttggaattatgcccaccggc
tcaggaaaatctctgtgttttcaaattccagctcttatgatggaaggaatcacactggtc
atatcccctttgatatcccttatgaaagatcaggtaacaactctcaatcaggcaggcatt
cacgccgcttatcttaacagttctctgactgcaaatcagtattataaggccctggcctac
gcacgggaagggcgataccccattatttatgtagcaccggaacgtctaatgacggaacaa
tttttagattttgcacttcacacgaagatttccatggtcgcggtcgatgaggcccattgt
gtttctcagtggggacaggatttcagacccagttatttaaaaattctggattttattgaa
aaacttccggaacggccggtaatcagcgcatttacagccactgcaacaaaagaggtccgg
gaggatgtgattgatattctgatgcttcgtgaaccggttattgtatcaaccggctatgac
aggcccaatctgtatctgggcgtgcagactccaaaggataagtatgccacattgaaaaat
tatgtggaatgtcatccaaaccagtgtgggatcatatactgtctgaccagaaaactggtg
gaagaagtctgcgataagctgaatgcagatggattttccgcaaccaggtatcatgctgga
ctaagtgatgcggaacgaagaaaaaatcaggatgattttatatttgacaggaataccatt
atggtagccaccaatgcatttggtatgggaattgataaatccaatgtgcgatttgtcatc
cattataatatgccgaaaaatctggaatcctattatcaggaagtcggccggtgctcccgg
gacggagagccgggagaatgcattttgctatacagcggtcaggatgtagtcaccaatcag
atgtttgttgataataatcaggacaaccaggaacttgatcctctcacccggcggatcgtc
atagaacgtgaccgggaaaggcttaaaaagatgacattttattcctttaccaacgaatgt
ttaagagattatattttaaggtactttggggaatatggagagaattactgcggcaattgt
tccaattgtatcagccagtttgaatctgtggatgtaacggcaatttccaaagcactgatt
ggctgtgtggagtccagcagacagcggtacggcaccacagtcatcattgatacggtgcat
ggagccaatacggcaaagatcagaaattatcggatgaatgaaaatccttattacagttct
ctggcaaaggttccttcctataaactccgtcaggttatgaatcatttgtttttaaatgat
tttctcgaagtaacaaacgatgaatatgccattgtaaaactaaccgaaaaatccaaagcc
atactggaagatcaagaaaccgtagtcatgaagatggcaaaggaacaggaacctgtacca
aaagaaaaaaacagcaaaaagatgaaaaaaccaaacggtgcagcagcagaattaacaaaa
gaagatgaaattatatttgaaaagctgagaaacctgcgtcttaaaattgccaaagaagaa
aaagttccgccttatatcgtattttcagacaaaaccttgctgcatatggcagttataaaa
ccaaagacaaaggaagaaatgctcacggtttcaggagttggagagtttaaggtggagaag
tatgggaatacattcctggagatttttaaactataa
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