Lacrimispora sinapis: VIG27_15805
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Entry
VIG27_15805 CDS
T10884
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lsia Lacrimispora sinapis
Brite
KEGG Orthology (KO) [BR:
lsia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lsia03009
]
VIG27_15805 (rlmD)
Enzymes [BR:
lsia01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
VIG27_15805 (rlmD)
Ribosome biogenesis [BR:
lsia03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
VIG27_15805 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
TRM5-TYW2_MTfase
MTS
Methyltransf_15
Cons_hypoth95
PrmA
Methyltransf_11
Methyltransf_12
UPF0020
Ubie_methyltran
PCMT
Methyltransf_4
Methyltransf_32
TRM
FtsJ
N6_N4_Mtase
TPMT
RrnaAD
Motif
Other DBs
NCBI-ProteinID:
XIJ20954
LinkDB
All DBs
Position
complement(3391505..3392875)
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AA seq
456 aa
AA seq
DB search
MSEWKKNDKIELSIEDMSETGEGIGKTDGFTWFIKDTVIGDQVEAKVMKVKKSYGFARLE
HIKKKSENRVVPKCPVARQCGGCQLQAMNYAEQLRYKEKKIWNNLVRIGGFSEVPMLPIM
GMEEPWRYRNKAQFPWGTDKEGNLVAGFYAGRTHSIIACGDCLLGIEENQEILKRIKSHM
ERHGLRPYEEETHKGLMRHTLIRKGFKTGELMVCQVINGKSLPHGEELVKSLLEIPGMKS
ISISINRDQTNVIMGTQVENLYGPGYITDYIGDVKYRISPLSFYQVNPVQTEKLYGTALE
YAGLTGDETVWDLYCGIGTISLFLAKKAKKVYGVEIVPQAIEDARENAKLNGIGNVEFFV
GKAEEVLPEQYEKNRIYADVIVVDPPRKGCDEVCLDTIVKMAPKRVVYVSCDSATLARDL
KYLGERGYEVVKVRGCDMFSQTTHVETCVLLSHKNS
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagtggaagaaaaatgacaaaattgagttgagcattgaagatatgagtgagacc
ggagagggcatcggaaagaccgatggatttacctggtttattaaggatacggtaattgga
gatcaggtagaggcaaaggtaatgaaggtgaagaaatcatacggttttgccagattggag
cacataaaaaagaagtctgaaaaccgtgtggtacccaaatgtccggtggcaagacagtgc
gggggctgtcagcttcaggccatgaattatgccgaacagctccgctataaagaaaaaaag
atatggaacaacttagtcaggatcggcggcttttcagaagttcccatgcttccgattatg
ggaatggaggagccttggagataccggaataaagcacagtttccgtggggaacggataag
gaaggaaatcttgtcgccggcttttacgcaggccgtacccattccatcatcgcctgcggg
gactgcctgctgggaatagaagagaaccaggaaatcttaaaacggatcaagtcccatatg
gagcgccatggacttcgtccttatgaggaagagacccacaaagggttgatgcgccacacc
ctgatccgcaaaggctttaaaacgggcgaattgatggtatgccaggtgatcaatggaaag
agccttcctcacggtgaggagctggtaaaaagcctgttggaaattccaggtatgaaaagc
atttcgataagcatcaaccgggatcagaccaatgtgattatgggaacccaggtggagaat
ctatacggaccagggtatataacggattatatcggggacgtgaaataccgtatttcccct
ctgtccttctatcaggtaaatccggtgcagacagaaaaactctacggcacagcccttgaa
tatgcaggtcttaccggggatgaaaccgtctgggatctttactgcggcatcggaaccatt
tccctgttccttgcaaagaaggcgaagaaagtctatggagtggagatcgtgcctcaggcc
attgaagacgcaagggagaacgcaaagctcaacgggatcgggaatgtggaattcttcgtg
gggaaagccgaagaggtgttgccggaacagtatgagaagaataggatctacgcagatgta
attgtcgtggaccctcccagaaaaggatgcgatgaggtatgccttgataccatcgtgaag
atggcaccgaaaagggtggtgtatgtaagctgcgattccgctactttggcacgggatctt
aagtatctgggggagagagggtatgaggtggtgaaggtgcgggggtgtgatatgttttcg
cagacgactcatgtggagacgtgcgtacttttgtcccacaaaaattcgtaa
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