Lacrimispora sinapis: VIG27_15810
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Entry
VIG27_15810 CDS
T10884
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lsia Lacrimispora sinapis
Pathway
lsia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VIG27_15810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsia03019
]
VIG27_15810
03009 Ribosome biogenesis [BR:
lsia03009
]
VIG27_15810
Enzymes [BR:
lsia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VIG27_15810
Messenger RNA biogenesis [BR:
lsia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VIG27_15810
Ribosome biogenesis [BR:
lsia03009
]
Prokaryotic type
rRNA helicases
VIG27_15810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
XIJ20955
LinkDB
All DBs
Position
complement(3393086..3394756)
Genome browser
AA seq
556 aa
AA seq
DB search
METMRFDELQLDERILRAVADMGFEEASPIQAQAIPVQVEGRDIIGQAQTGTGKTAAFGI
PLLQKIDPKVKKLQAVALCPTRELAIQVADEIRRLGKYMHGVKILPIYGGQDIVKQIRSL
KDGTQIIIGTPGRVMDHMRRKTVKFDFVHTVVMDEADEMLNMGFLEDMETILSQLPEERQ
TVMFSATMPPAIMDIARKFQQEPVTVKVVKKELTVPKVTQYYYEVKPKSKVEVMCRLLDM
YAPKLSVAFCNTKKQVDELVQALQGRGYFAEGLHGDLKQIQRDRVMNSFRNGKTEILVAT
DVAARGIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRANREGIAFSFVVGKEVYKLRDIQR
YCKTKIVPQAIPSLNDVTAIKVDKILESVADTIGDTDLSKMVNIIEKKLLEEDYTSLDLA
AALLKMMMGEENEDVIDTREPRSLDDLDNYFGNSGRGRSRNSNGRGRGDSSRERDDMARL
FINIGKNQNVKPGDILGAIAGESGMPGKMVGSIDMYDKYTFVEVPRESADVVLKAMKDVK
IKGKNIHMEKANGKGR
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggaaacaatgagatttgatgaattacagttagatgaaagaattctgcgggctgtagca
gatatgggatttgaagaggcatccccgatccaggcccaggcaattccggtccaggtagaa
ggaagagatatcatcggccaggctcagacaggaaccggtaagaccgcagcctttggtatt
cccctgttacagaaaattgaccctaaggtaaagaagcttcaggcggttgctctctgtcct
accagagaacttgcaattcaggtagcagatgagatccgcaggcttggtaaatatatgcat
ggtgtaaaaatcctgccaatttacggcggacaggacattgtgaaacagatccgttctttg
aaggacggaacccagatcatcatcggtactcccggacgtgttatggatcatatgcgccgc
aagaccgtgaaatttgattttgtccacaccgtagtgatggatgaagcagatgagatgctg
aacatgggatttttggaagatatggaaaccattttaagccagcttcccgaagaacgccag
accgtcatgttctctgcaaccatgccgcccgccattatggatatcgcgagaaagttccag
caggagccggtgactgtaaaagttgtgaagaaagaactgactgttccgaaggtaacccag
tactattatgaagtgaagccaaagagcaaggtggaagttatgtgccgtctgttagacatg
tacgcaccaaagctttccgttgccttctgtaacaccaaaaaacaggtagacgaactggta
caggcacttcagggccgcggctatttcgccgaggggcttcatggtgacttaaagcagata
cagcgtgacagggtcatgaacagcttccgtaacggtaagacggagatcttagtggctacc
gacgtagcagcccgtggaattgacgtagacgacgtagaagcggtattcaactacgacctt
ccccaggatgatgagtactatgtgcacagaatcggccgtaccggacgtgcaaaccgggaa
ggaattgcattcagctttgtggtaggtaaggaagtctacaagcttcgtgacatccagcgt
tactgcaagaccaagatcgtacctcaggccattccttctttaaatgatgtaactgccatc
aaggtagacaagattttagagagtgtagccgatacgattggcgataccgatttaagcaag
atggtaaacatcatcgagaaaaagcttttagaagaagattacacctccctggatctggca
gctgcactgctgaagatgatgatgggtgaggaaaatgaagatgtgatcgacaccagagag
ccacgctctcttgacgatctggataactactttggaaacagcggccgcggacgctcaaga
aattcaaacggccgtggaagaggggattcttccagagaaagagatgatatggcacgtctc
ttcatcaacatcggaaagaaccagaacgtaaagcctggagacatcctgggcgccattgcc
ggagaatccggaatgcctggtaaaatggtaggaagcatcgacatgtatgacaaatataca
tttgtagaggttccaagagaaagtgcagacgttgtactgaaagccatgaaagatgtaaag
atcaaaggtaaaaatatccatatggaaaaagccaacggaaaaggcagataa
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