Leptidea sinapis (Wood White): 126964820
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Entry
126964820 CDS
T09272
Name
(RefSeq) exosome complex exonuclease RRP44 isoform X1
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
lsin
Leptidea sinapis (Wood White)
Pathway
lsin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126964820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsin03019
]
126964820
Messenger RNA biogenesis [BR:
lsin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
126964820
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Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
CSD2
Rrp44_S1
OB_HELZ2
Dis3l2_C_term
Motif
Other DBs
NCBI-GeneID:
126964820
NCBI-ProteinID:
XP_050664069
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All DBs
Position
6:16411432..16471828
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AA seq
981 aa
AA seq
DB search
MNVIKMWTTKTFLTKTKRGNILKIVREHYLRDDLLCGSEACDICPHKDDEYVLDAKPESI
CALFDFNHYIVLDSNVVLHQIDVLEDDALKNVIVLQTVLEEVKHQNTSIYQRLLEIIGDK
KRKFFSFVNEHHKETYVERNPGEKPNDRNDRAICTAASWYDKHLSVIGAAGQCPQIVLLT
DDENNRKRAQEQGILSCSVKDYIENVNGFPGLVDKLSKNVMPESCTRDALYPAHLTPSQI
HGGIRSGILHQGTFHASRDNVLEGSATVSGYEKSILLQGHIGINRAIDGDVVAVEIFPED
QWRKPSDIVLEDKATDDPGDVLDEESILVNTNADDEIQPTGRVVGIIKRKWRQYCGILLA
SKFPGATRHLFTPAEKRIPRVRIETRQSELLAAQRILVALDSWPRNSRYPLGHFVRALGP
IGDKDAENEVILLEHDVPHARFSEAVLSCLPPDDWTIPEEEIKKRVDLRGVCVCSVDPPG
CTDIDDALHARPLADKSSEGLNKYEVGVHIADVTHFVRPNTALDQEAASRSTTVYLVGKR
IDMVPDLLSSNLCSLRGGEERLAFSSVWEIDENANVLSTKFHKSVIKSRAAMTYEQAQIA
IDDASRRDEVASSLRILNTLAKKLKQKRMDNGALVLASPEIRFEVDSETHEPLEVQAKRM
LETNSMVEEFMLLANVSVAKHVAAEFPQCAMLRRHPAPHPDNFVAFLKAAKQQGFEIDIT
TNKSFAKSLDEAVIPSRPFFNTLLRIMATRCMQQAVYFSSGTIAHELYYHYGLACPIYTH
FTSPIRRYADVVVHRLLAASIGADQTHASILDTKYAVSLCDNLNYRHRQAQYAGRASVAM
NTHILFKNRVEIENAVVLAVKRNALQVLIPKYGLEGPLFLPSDMFTYNDEEHMQICQGVT
LKTFDEITVRLTLDSTNLQHRKLVFQLVEPFIAGFSYVDDKKGDTDIQMTESNVNVNETV
TDNKQKRKVDEMKTKKKKSKK
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtcattaaaatgtggaccacaaagacgtttctaacgaaaacaaaacgtggaaac
atacttaagatcgtgagggagcattatttacgtgatgatttactatgtggttccgaagca
tgtgacatttgcccacacaaagatgatgaatatgtgctggatgcaaaacctgagtcaatt
tgtgcactctttgatttcaatcactatatagtattagactcaaatgtagtcctgcatcaa
atagatgtgcttgaagatgatgctttgaagaatgttatagtacttcaaacagtcctagaa
gaggttaagcatcagaatacaagcatatatcagagattgcttgaaattattggagataag
aaaagaaagttcttttcatttgtcaatgaacatcacaaagaaacatatgtagaacgtaat
ccaggagaaaagccaaatgatagaaatgacagagctatttgtacggcagcatcatggtat
gataaacacctttccgtaatcggtgcagctggacaatgcccacagattgtactgttgacc
gatgatgaaaataataggaagagagcccaagaacaaggcattctaagttgctcagttaag
gattacattgagaatgtaaatggatttccgggactagtagataagttatccaagaatgtt
atgccagagagttgcactcgagatgccttgtatccagctcatttgacgccttcacagata
catggaggcatcagaagtgggatattgcaccaaggcacatttcatgcatctagagacaac
gtcctcgaagggtcagctactgtctctggttatgaaaaatcgatattactccaaggccac
atcggtatcaacagagccattgatggtgatgttgtagctgtagagatcttccccgaagat
caatggaggaaacccagcgatatagtgctagaagacaaagctaccgatgatcctggcgac
gtgttggacgaggagagcatcctggtgaacacgaatgcggatgatgagatacagccaacg
gggagagtcgtcggcatcataaaaagaaaatggcggcagtactgtggaatattgttggcc
agcaagtttccaggtgcgacacgtcacctatttacccccgccgagaaacgaataccgcgc
gtgcgtatcgagacccgccaaagtgagctgcttgcggcgcagaggatactggtggccctc
gactcgtggcccaggaacagtcgctacccgttgggacatttcgtgagggcactcggacct
ataggtgacaaggacgcggagaacgaggtgatactcttagagcacgatgtgccccacgcc
aggttcagtgaggcagtgttgtcttgcttaccacctgatgattggaccatccctgaagag
gaaataaagaagcgcgtagatctccgaggcgtgtgtgtctgctcggtggacccgcccggc
tgtaccgatatcgatgacgctctgcacgcgaggcctctggcagacaagagcagcgagggc
ctcaacaagtacgaggtgggagtccacatcgcggacgtgacacacttcgtgaggcccaac
acggcgctggaccaagaggccgcctcgcggtccacgacggtgtacctcgttggaaagagg
attgatatggtcccagatttgcttagttccaacctttgttcactgcgcggtggggaagag
agacttgcgttctcttcggtttgggaaattgatgaaaacgcgaacgtgctgtctacaaaa
ttccacaagagtgttataaaatcgcgggccgccatgacctacgagcaggctcagatcgcc
atcgacgacgcatcccgcagagacgaggtggcctcctccctcaggatactgaacacgctc
gccaagaaactgaagcagaagcggatggacaacggagcgctggtgctcgcctcgcccgag
atcaggttcgaggtagattcggagacgcacgagccattagaagtgcaagccaaacgcatg
ttggagaccaactcgatggttgaagagttcatgttgctggccaacgtgagtgtggccaag
cacgtggcggccgagttcccgcagtgcgccatgctccggcgacaccccgcgccccatccc
gataactttgtggccttcctaaaggcggcgaaacaacagggtttcgaaatagacatcaca
actaacaaatcgttcgcgaagtccctggacgaggccgtgataccgtcgcggccgttcttc
aacactctgctgcgcatcatggccacccggtgcatgcagcaggcggtctacttctccagc
gggaccatcgcgcacgaactgtactaccactacggactcgcgtgccctatttatacgcac
ttcacgtccccgatacgtaggtacgcggatgtagtcgtccaccgcctgctggcggccagt
atcggcgcggaccagacgcacgcctccatcttggacaccaaatacgcggtgtcgctctgt
gacaacctcaactacaggcaccggcaggcgcagtacgcgggccgcgcgtccgtcgccatg
aacacgcacatcctgtttaaaaaccgagtggagatagagaacgcagtagtgctggcggta
aaacgaaacgcgcttcaagtgctcataccaaagtacggactcgaaggacctctatttttg
cctagcgacatgtttacctataatgacgaggagcacatgcagatttgccaaggagtaacg
ctgaagactttcgacgaaataaccgtgagacttactcttgacagcacaaatctacaacac
aggaaactggttttccaattagtcgaaccatttatagcgggctttagctacgttgacgac
aagaagggtgacactgacattcaaatgacagaatcaaatgtaaacgtcaatgagactgtc
acagataataaacagaagaggaaagtcgatgaaatgaagacaaagaagaaaaagtccaag
aaatga
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