Leptidea sinapis (Wood White): 126966379
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Entry
126966379 CDS
T09272
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
lsin
Leptidea sinapis (Wood White)
Pathway
lsin03020
RNA polymerase
lsin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lsin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
126966379
09124 Replication and repair
03420 Nucleotide excision repair
126966379
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsin03021
]
126966379
03400 DNA repair and recombination proteins [BR:
lsin03400
]
126966379
Enzymes [BR:
lsin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
126966379
Transcription machinery [BR:
lsin03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
126966379
DNA repair and recombination proteins [BR:
lsin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
126966379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
126966379
NCBI-ProteinID:
XP_050666325
LinkDB
All DBs
Position
10:complement(11634818..11648572)
Genome browser
AA seq
1889 aa
AA seq
DB search
MATTSDSKAIVRQVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGV
IDRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPTNP
KIKEVVMKSKGQPRKRLTYVYDLCKGKNICEGGEDMDIGKEGEEGKRGTGHGGCGHYQPS
IRRQGLDLTAEWKHANEDTQEKKIIITAERVWEILKQITDEESFILGMDPKFARPDWMIV
TVLPVPPLSVRPAVVMFGSAKNQDDLTHKLADIIKANNELMRNEQSGAAAHVLADNIRML
QFHVATFVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD
PNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNAQYPGAKYIVRDNGERIDLR
FHPKPSDLHLQYGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS
PYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTK
RDVFLTKEQVMNLLMFLPTWDGKIPQPCILKPQPLWTGKQIFTLIIPGNVNMVRTHSTHP
DEEDDGPYKWISPGDTRVIVEHGELLMGILCKKSLGASAGSLLHICMLELGHETAGRFYG
NIQTVINNWLLLEGHSIGIGDTIADPQTYQEIQRAIVKAKDDVIEVIQKAHNMELEPTPG
NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ
QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDT
AVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNMPTIK
LSNKTFEKKFKFDPTNERYLKRIFNEDIIKELTESGYVIADLESEWDQLSKDRTALRQIF
PSGESKVVLPCNFKRMIWNVQKIFHINKRMPTDLSPIKVIQGVKELLKKCVIVAGEDRLS
KQANENATLLFQCLVRSTLCTKFVSEDYRLSTEAFEWLIGEIETRFQQAQVNPGEMVGAL
AAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLIGGAARD
AEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPW
LLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNNEESKFQ
DNEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTEAKKRITITDQGEFK
AIAEWLLETDGTSLMKVLSERDVDPIRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFY
GLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVD
PMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKHGMEMGGLGVGMGVGGGMYFGVGTPSMT
PLMTPWSNQNTPGYGSSVWSPGQVGSSMTPGPSFSPSGASDASGMSPSYSAWSPQPGSPG
SPGAPLSPYASPAGASPSYSPTSPVYAAASPSLTPTSPHYSPTSPSYSPTSPNYSPTSPI
YSPTSPSYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPAYSPTSPGYSPSSPSYSPTSPVYSPASLSYSPSSPNYTPTSPVY
SPTSPSYSPTSPSYSPTSNNYSPSPPKYSPTSPNYSPTSPSLSGGSPTYSPTSPQYSPTS
RNSQYSPSPAYSPSSPQHPGSTRYSPSSPNYSPTSSKYSPTSPRYTPTSPNYSPSTPAYS
PSSAGPSSTYSPTSPNYSPTSPTYDEGDD
NT seq
5670 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgacgagtgattcgaaggcgattgtgcgacaagtaaaaagagtgcaatttggt
attttatctccagatgaaattcgacggatgtctgttaccgaaggtggcattcgctttcct
gaaaccatggaaggtggtagacccaaacttggcggtcttatggatccacggcaaggggtt
attgataggacatccagatgtcaaacatgtgctgggaatatgactgaatgtccaggtcat
tttggacacattgatttagctaaaccagtatttcacattggattcataacaaaaactatc
aaaatattgagatgcgtttgtttctattgttctaaacttcttgtcagcccgacaaatccc
aagattaaagaagttgttatgaaatcaaaaggacagccacgtaaaaggttgacttatgtg
tatgatttatgtaagggtaaaaatatttgtgagggaggtgaagatatggatataggtaaa
gaaggtgaggaaggtaaaagaggtacaggacatggaggttgtggccattaccaaccatca
ataaggagacaaggtttggacttgactgcggaatggaaacatgcaaatgaagatacacaa
gagaaaaagatcataataaccgcagaacgagtttgggaaatattaaagcaaattacggat
gaggaatcatttatattgggtatggatcccaagtttgccagacccgattggatgattgtc
actgtactaccagtacctcctctttctgttagaccagcagttgttatgtttggatctgca
aaaaatcaagatgacttgacacacaaacttgctgatattattaaagcaaacaatgagtta
atgagaaatgaacaatctggtgcagctgctcatgttctggctgacaatataaggatgttg
cagtttcatgtggcaacatttgttgacaatgatatgcctggcatgccaaaagctatgcag
aaatcaggaaaaccattaaaagcaattaaagcccgattaaaaggcaaagaaggaagaatt
agaggaaatctcatggggaaacgtgttgatttttcagcaagaactgtcattacacctgat
cctaatttgcgtattgatcaagtaggtgttccaaggtcgatagctcagaatttgactttc
cctgaattagtcactccttttaatattgatagaatgcaagaacttgtcaggagaggaaat
gcccaatatcctggcgcaaaatacatagtacgtgacaatggcgaaaggatagatttaaga
tttcatccaaaaccatcagatcttcatttgcaatatggctataaagtggaaaggcattta
agggatgatgatttagttatatttaatcgacagcccactctgcacaaaatgagtatgatg
ggtcacagagtcaaggtattaccatggtcaacattccgaatgaacttgagttgtacatca
ccatacaatgccgattttgacggtgatgaaatgaacttacatgtaccacagtcaatggag
acaagagctgaagtagaaaacatacatattacacctaggcaaatcataaccccacaagct
aacaaacctgttatgggtattgtacaagacacacttacagctgttagaaaaatgactaaa
agagatgtatttcttacaaaagagcaggttatgaatcttctaatgtttttacccacatgg
gatggtaaaattcctcagccatgtatattaaaaccacaacccctttggactggcaagcaa
atatttactttgattattccgggtaatgttaatatggttcgtacacattccacacatcct
gatgaagaagatgatggcccatataaatggatttctcctggtgatactagagtaattgtt
gagcatggcgaactgctaatgggtatattgtgtaaaaaatctttaggtgcgtcagcagga
tcactcttgcatatttgtatgttggaattgggacatgaaaccgccggccgtttctatggt
aatattcagactgtaatcaacaactggcttctcttggaaggtcactcaattggtattggt
gacacaattgctgatccacaaacatatcaggagattcagcgtgctattgtgaaggcgaaa
gatgatgtcatagaagtaattcagaaagcacataacatggaactggaacctacacctggt
aatacactcagacaaacatttgaaaatcaagtaaatcgcatcttgaacgacgctcgtgat
aaaactggtggatcagctaagaagtctctcactgagtacaacaaccttaaagctatggtg
gtagcaggttctaaaggatcaaatattaatatttctcaggttattgcttgtgtaggacaa
cagaatgttgagggtaaaagaattccatttgggttccgtaaaagaacattaccacatttt
attaaagacgattatggtcctgaatcaagaggattcgtagaaaattcgtatctagccggt
ctcaccccctctgagttttatttccatgctatgggaggtcgtgaaggtcttattgatact
gctgtaaaaactgcagagactggttatattcagcgacgtcttataaaggctatggagtcg
gtaatggttcattatgatggtacagtacgtaattcagttggacaacttattcagctgcgt
tacggcgaagatggcttggcaggcgaaactgttgaattccaaaacatgccaactatcaaa
ttgtccaacaaaacatttgaaaagaagttcaagtttgatcccacaaatgaaaggtatctc
aagagaatatttaatgaagatattatcaaagaactaactgagtctggttatgtgattgct
gatctagaaagtgaatgggatcaattaagcaaagatagaacagctttgcgtcagatattc
ccaagtggcgaatcgaaagttgtattgccttgtaattttaagagaatgatttggaatgtg
cagaagattttccatattaacaaaaggatgcctacagatttaagtcctataaaagtgata
cagggtgtgaaggaattactgaaaaaatgtgttattgtggctggtgaggaccgtctctct
aaacaagctaatgaaaacgcaacattgctatttcaatgtcttgtaagatcaacattatgt
acaaagtttgtttctgaagactatcgtttatcaacagaagcttttgaatggttaataggg
gaaatagaaactcgttttcaacaagcccaagtaaacccgggtgaaatggttggagctcta
gcagcacaatctttgggagaaccggccacacagatgacattgaacacttttcattttgct
ggtgtgtcttccaaaaatgtaacacttggtgtaccccgtctaaaagaaatcattaatatt
tccaaaaaacctaaagctccatccctaactgtattccttattggtggagcagctcgtgac
gccgaaaaagctaaaaatgttttgtgtcgtttggaacatactacattacgtaaagtcact
gctaacactgctatttattatgaccctgaccctcaaaatactgtaattgctgaagatcag
gaattcgtcaatgtttattatgaaatgcctgattttgacccaactaaaatatccccttgg
ctcttacgtattgaattggatcgcaagagaatgactgataaaaagttaaccatggaacag
atagctgaaaagattaatgctgggtttggtgatgacctaaattgtatttttaatgatgat
aatgctgaaaaactagtccttcgtataagaataatgaacaatgaagaaagcaagttccaa
gacaatgaagaagaaactgttgataaaatggaagatgacatgttcctcagatgtattgaa
gctaatatgctttctgatatgacccttcaaggtatagaagccatagctaaagtatacatg
cacttaccacaaactgaagcaaagaaacgaattacaataacagaccaaggagaatttaaa
gctattgctgaatggttgttggaaactgatggtacatcactcatgaaagttctgtctgaa
agggatgtggatcctataagaacatttagtaacgacatttgtgaaattttccaagtattg
ggtattgaagctgtacgaaaatcggttgaaaaagaaatgaatgctgtactgcagttctat
ggtctttacgtaaactaccgacatttggccttactttgtgacgtaatgactgcaaaaggt
catcttatggctattacacgccacggtattaatagacaagatactggtgccctcatgaga
tgttcatttgaagaaactgttgatgtgctgttagatgctgccagtcatgctgaagtagac
cctatgagaggtgtatcggagaatattataatgggtcagctgcccagaatgggaactgga
tgttttgatttgttactggatgctgagaaatgtaagcatggtatggaaatgggaggtttg
ggggttggaatgggagttggaggtggaatgtattttggagtcggaacaccctcaatgaca
ccattgatgactccttggtcaaatcaaaatacacctggatatggtagcagtgtttggtca
cctggtcaagttggcagcagtatgacacctgggccgtcgttctcaccttctggcgcgtct
gatgcttcaggaatgtcgccttcatacagtgcttggtcgccccaacctggatcaccgggc
tctccgggcgctccattgtccccctatgcttctcccgccggtgcttcaccatcatactcc
ccaactagtcctgtttacgcagctgcgtctcccagtcttactcccacatctccacactat
tcccctactagtccatcttattctcccacatcgccaaattattccccaacatcacctatt
tactcccccacttcccccagctattcgccaacgtcgcccggatactctccaacgtcaccc
tcgtactctccaacatctccaagttattcaccaacctcacccagctattcaccaacaagt
cctgcttattctcccacatctcccagctattcaccgacatcgccgagttattcaccaaca
agtccatcatattctcctacaagtccctcctattcgccaacaagtcctgcatattctccc
acgtctcctggttattctccatcttcacctagttattctccaacaagtcccgtatatagt
cctgcatcactgagctattctccatcatcacctaattacactccaacttcacccgtttac
tccccgacaagtccttcgtattctccgacgtctccatcatactcgccaacctcgaataac
tactctccctctccgccaaaatattcgccgacttcgccgaattactccccaacatcgcca
tcgttatcaggtggcagtccgacatattctccaacaagtccccaatactctcccactagc
cgcaactcacagtattcaccgagcccggcttactctccatcatctcctcaacatcccggc
agcacaagatattctccgtcatcaccgaactattcaccaacgtcaagcaaatactcgccg
acatcaccaagatatacaccaacgtctccaaattattcaccatccacgccggcttactca
ccatcgtctgctggtccttcttctacatactctccaacgtcacctaactactcacctaca
tcgcctacatatgatgagggtgacgattaa
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integrated database retrieval system
