Leptidea sinapis (Wood White): 126966577
Help
Entry
126966577 CDS
T09272
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lsin
Leptidea sinapis (Wood White)
Pathway
lsin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126966577
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsin03019
]
126966577
03041 Spliceosome [BR:
lsin03041
]
126966577
03009 Ribosome biogenesis [BR:
lsin03009
]
126966577
03016 Transfer RNA biogenesis [BR:
lsin03016
]
126966577
Enzymes [BR:
lsin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126966577
Messenger RNA biogenesis [BR:
lsin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
126966577
Spliceosome [BR:
lsin03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
126966577
Complex C
U4/U6.U5 tri-SnRNP related factors
126966577
Ribosome biogenesis [BR:
lsin03009
]
Eukaryotic type
Pre-60S particles
Helicases
126966577
Transfer RNA biogenesis [BR:
lsin03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
126966577
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
126966577
NCBI-ProteinID:
XP_050666669
LinkDB
All DBs
Position
10:7697513..7720876
Genome browser
AA seq
1033 aa
AA seq
DB search
MDISNLFDCFEEPTTNESSAQFPKWENKEKESLQSIKDPSSSNKRPHEQVEYADTEVKPE
DNKKQKIEDLISIADLNLDLANSRIVIHTLDAEEGCTHEVAIPPNQEYTALKPIASEPAK
EYTFILDPFQKEAIMCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKSKQRVIYTTPIKAL
SNQKYREFSEEFQDVGLITGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEI
HYMRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCRLHSQPCHVVYTEYRPT
PLQHYVFPAGGDGIHLVVDEKGTFKDENFNAAMAVLSNSGDSSQNDKRGRRGGPTGFSQP
NIFSIVKMIMEKNFAPVIIFSFSKKHCELYAMQMAKLDFNTIEEKKLVDEVFNNAMDVLS
EEDRKLPQVENVIPLLRRGIGIHHGGLLPILKETIEILFGLGLIKALFATETFAMGLNMP
ARTVVFTSCQKFDGRDFRFISSGEYIQMSGRAGRRGLDDKGIVILMIDQKVTPTIVKGMV
QGKADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQAAIPELIEKVKAKHEEY
SALSIEDNDSIATYCLIHDELEMLGIQFRSFITKPEYLKPFLQPGRLVKVKTEKYEYDWG
VIVNFKHKTGKGKKGKDENPLTADTVIMVDILLHVKKPGKDDYETNIPCPPGETGDVEVV
PIVHTLIHQISSLRVYYPKDLRPSDSRKSVLKTINEVKKRFPEGPPLLNPITDMKINDRV
FKDCVDKIKIFEERLYAHPLHKDKNRAALKAAYDQKQKVYEELQEAKRELEKAKSILQMD
ELKKRKRVLRRMGYCTMADVIELKGRIACELSSADELLLTELIFNGVFNSLTAAQSASLV
SCFVCDENSTQASATGEELRGVLRQLQEYARRIAKVSIECSMQLDEDEYVGKFKCTLMDV
VHAWANGANFLQICKMTDVFEGSIIRCMRRLEEVLRQLCQAAKNIGNTDLEVKFSEAIRI
LKRDIVFAASLYM
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggatatatctaatttatttgattgcttcgaagaacccacaactaatgaatcttcagca
cagttccctaaatgggaaaataaagaaaaagaatcattacaatcaattaaagatccatct
tcttcaaataaacgacctcatgaacaggtagaatatgctgatactgaagtaaaaccagaa
gacaataaaaaacaaaaaattgaagatttaatatcaatagctgatctaaacttagattta
gcaaattctcgaatagtgattcacacacttgatgccgaggaagggtgcacacatgaggtt
gcaatacctccaaaccaagagtatacagcactaaaacccattgcttccgagccagcgaaa
gaatacacttttatattggatccatttcaaaaagaagctattatgtgtatagataactta
caatcagttcttgtttctgcacatacttctgcggggaaaactgttgttgcagaatatgct
attgctctttctctgaaaagtaaacaaagagtgatatatacaacacctatcaaagctctc
tcaaatcaaaagtacagggagttctcagaagaatttcaagatgttggcttaattactggt
gacgttactatcaatccatcggcttcatgtctcattatgactacagagattctaaggaat
atgttgtatagaggatctgagatcatgagagaagtgggttgggtggtgtttgatgaaata
cattacatgagagacaaagaaagaggggttgtctgggaagagaccttaattcttctcccg
gacaacgtccactacgtgttcttgtcggccacgatccccaacgcgcgtcagtttgccgag
tgggtgtgtcggttgcactcgcagccgtgccacgtggtctacacggagtaccgacccacc
ccgctgcagcactatgtcttccccgccggcggagacggcatacacctggttgtggatgaa
aagggtacttttaaagatgagaactttaacgcggctatggcggttctgagtaactcgggt
gattcaagtcagaacgacaagcgaggtcgccgcggtggacccacagggttcagccagccc
aacatatttagtatagtcaaaatgatcatggagaaaaacttcgcgccagtcatcatattc
agtttcagtaagaagcactgtgagctgtatgcgatgcaaatggctaagttggactttaac
acaattgaagaaaaaaagttagttgatgaagtgttcaacaacgcaatggatgttctatcg
gaagaggaccgcaagttgccgcaggttgagaacgtgataccgctgctgcggcgcggaata
ggcatccatcacggaggtctactaccgatactgaaggagactatcgagatacttttcggc
ttgggactcattaaggctctgtttgcgacggaaactttcgccatgggtcttaacatgcca
gcgaggactgtggttttcaccagctgtcagaaattcgacggaagagatttcagattcata
tcatcaggagagtatatccagatgtctggaagggccggacgacgagggttggacgataaa
ggcattgttatactgatgattgaccaaaaggttacacccactattgttaaaggaatggtg
caaggaaaggcggatccgatcaattcagctttccatctaacttacaatatggtattaaat
ctgctgcgtgtagaggaaataaatcccgaatatatgttagaaagaagtttcttccaattt
caaaatcaagcagccattcctgagttaattgaaaaggttaaagcgaaacatgaggaatac
tcggctctctcaatagaggacaatgactccatagcgacgtattgcctcatccatgacgag
ctggaaatgcttggcatacagttcagatccttcatcaccaagcctgagtatctgaaacca
ttcctgcagcccgggagactagtaaaggttaaaacagaaaaatatgagtatgactggggt
gtaatagtaaactttaagcacaaaactggcaaaggaaagaagggcaaggatgaaaacccc
ctgactgctgatacagtcataatggtggacatattgctgcatgtaaagaagcctggcaaa
gatgactacgagaccaatataccttgtccacccggtgagacaggagatgttgaagttgta
cccatagttcacactctgatacatcaaataagttcactcagggtgtactatccaaaagac
ttgcggccatcggacagccggaagtctgtgctcaaaactatcaacgaagtgaagaaacgt
ttccctgaaggaccgccactactgaatccaataacagatatgaaaattaacgatcgggtg
tttaaggactgcgttgataaaattaagatttttgaagaaagattatacgcccacccgcta
cataaagacaaaaaccgcgccgcgctaaaggcggcctacgaccagaaacaaaaggtttac
gaagaactgcaggaggccaagcgtgagttggagaaggccaagagcatactgcagatggac
gagctgaagaaacggaagagagtcctgaggaggatgggatactgtacaatggcggatgtg
atcgagctgaagggacgcatcgcctgcgagctcagcagcgcggacgaactgttgctgact
gagttgatattcaacggtgtattcaactcgttgacggcggcgcagagtgcttcgctggtg
agctgcttcgtgtgcgacgagaactccacgcaggcctccgccacgggggaggaactgcgc
ggagtgctgcggcagctgcaggagtacgcgaggcgcatcgccaaggtgtcgatagagtgc
agcatgcagctggatgaagacgagtacgtgggcaagttcaaatgcacgctcatggatgtg
gtgcacgcgtgggccaacggcgccaacttcctgcagatctgcaagatgaccgacgtcttt
gaaggctcaataattcggtgtatgcgtcgactggaggaggttctgcggcagctgtgtcag
gctgccaaaaacatcggtaatacggacctcgaggtgaagttcagtgaggccattaggata
ttgaagcgagacatcgttttcgcagccagtctgtatatgtag
DBGET
integrated database retrieval system
