Leptidea sinapis (Wood White): 126967005
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Entry
126967005 CDS
T09272
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lsin
Leptidea sinapis (Wood White)
Pathway
lsin03013
Nucleocytoplasmic transport
lsin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsin00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126967005
03015 mRNA surveillance pathway
126967005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsin03019
]
126967005
Enzymes [BR:
lsin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
126967005
5.6.2.5 RNA 5'-3' helicase
126967005
Messenger RNA biogenesis [BR:
lsin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
126967005
mRNA cycle factors
Common to processing body (P body) and stress granule
126967005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
ATPase
AAA_16
NPHP3_N
AAA_22
SRP54
nSTAND3
AAA_5
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
126967005
NCBI-ProteinID:
XP_050667260
LinkDB
All DBs
Position
12:917238..928851
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AA seq
1037 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFEFTDFTLPSQSQTQASQHDHGLTGSNQ
VNGLGRSDLKLSSVTNAIAELQFEEEDEALYSSKELPDHACKYCGIHDPSTVVMCNICNK
WFCNGRGNTSGSHIINHMVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAKAD
SVVVLLCRQPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKVPSEAEQMRARQVTPQQI
VRLEELWRDNVDATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRLKE
SQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKAWSGVGHVIK
VPDNYGDDVGLELKSGAGGPLDCTSNFVVDFIWKSTSFDRMQLALRKFAVDDSSVSGYIY
RRLLGHEVEEVLFRVHLPKHFSAPKLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTS
ATIVYQLVRQNGGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLALH
EQARALGSADSELRKLTRLKEEAGELSAADERRYRALRRAAERRLLDAADVVCTTCVGAG
DPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKVDFPWPR
PDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLRVGVRPEQIGIITPYEGQRS
YLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRLNV
ALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKKLIN
AQNPGSHFMSTSMFDAREAMVPGSVYDRARPLRDPLAYVGPERAAMLHAPVPPAAFAAHR
GLTRPPINNNQRSARKRPPRLSQEPLSQQPPLSLSQGASQPDFSQESIAPDCPSQPDGLL
SQDSSYQGGFRARCSQY
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttgatgcgtatggaccgagttctcaaaccctcacgtttttggataccgaggaa
gctgatttaatcggtgctgatactcaaggatccgaattcgaatttacggattttacatta
ccatcacagagtcaaacccaagcatcgcaacacgaccatggacttactggttccaatcaa
gttaatggtttggggagatcggatcttaagctgtcgagtgtaacaaatgccattgcggaa
ttacaatttgaagaagaagatgaagctttgtacagcagcaaggagttgccagatcatgcc
tgcaaatactgtggcatacatgacccctcaactgtggttatgtgtaatatctgtaacaaa
tggttctgcaatggccgagggaacacatcagggtcacatattatcaaccacatggtgaga
gcaaaacataaggaagcagctttacatcgtgacgggccactcggtgaaacattactggaa
tgctactcatgtggggctcgtaatgtgttcgttttgggcttcattcccgccaaggctgat
tctgtagtagtactactttgcaggcaaccttgtgcagctcagagctccctcaaggatatg
aactgggatcaagagcagtggaaaccattaatctctgaccgagccttcttatcgtggctt
gtcaaggttccatctgaagcagagcaaatgagagctcgtcaggttactccacaacagata
gttcgtctggaagagctctggcgcgacaacgtggatgctacattccaagatctagagaag
ccgggagtagatgaggaaccacaccaagtcctgttgagatatgaagatggataccaatac
caaaatatttttggcccccttgtgaagttggaagcggattatgacaagagactcaaggag
tcacagacgcaagaaggaatcgaagtgcgctgggatgtgggacttaacaagaagactata
gcctactttactttggccaaaactgacagcgacatgaaactgatgcatggtgacgagctt
agattgagatatgttggtgagttgcacaaggcgtggtcgggtgtcggccacgtcatcaag
gttcccgacaattacggtgacgacgtcgggctagagttgaagtcgggggccggcggaccg
ctcgactgtacttccaacttcgtcgttgatttcatatggaagagcacatcttttgacaga
atgcaactggccctgcgaaagttcgctgtagacgattcctctgtgtcaggatatatctac
cgtcgcctgcttggtcatgaagtggaggaggttttgttcagagtgcatcttcccaaacac
ttcagtgctcctaaactgcccgatttaaatagatcacaggtatatgctgttaaacatgcg
cttcagcgtccattgtcgctgatccaaggaccgccaggaactggtaaaaccgttacttct
gcaacaattgtctatcaacttgtgagacaaaatggcggcccagttttagtatgtgctcct
tcaaacactgcagttgatcaactcacagagaaaatacatcgcactggtctcaaggtggtg
agactttgtgccaaatcacgtgaggccatggagtcgtctgtgtccttccttgcacttcat
gaacaggctcgtgcattgggatcagctgatagtgagctacgtaagttgaccaggctgaag
gaagaagctggtgaactgtccgcagcagatgaacgtagatacagggccttgcgcagagct
gcagagagacggcttctagatgctgctgatgttgtttgcactacctgtgtcggagcaggt
gacccacgtgttgcacgcatgcgcttccagtctatcctcattgatgaaggaatgcagtct
accgagcctgaatgcatggtgcctgttgttcttggggccagacaactgatccttgttggt
gaccattgtcaattgggtccagtcgtgatgtgcaagaaggctgccaaagctggtttaagc
cagagtcttttcgaacgtttagtcgtgttaggaatacgccctttccgtctcgaagtccaa
taccgcatgcacccagaactatctcgatttccttcagatttcttctatgaaggttctctc
caaaatggtgtcagtgctgaagagaggcgtcttcataaagtcgactttccatggccgagg
ccagacagaccaatgttcttttacgtgacccaaggccaggaagagattgccggatccgga
acatcatacctaaaccgtacggaggctgcaaatgttgagaagttgaccacccgtttctta
agagtaggagtacgacccgagcaaattggaatcattacaccttacgaaggtcagcggtct
tatctagtccagcacatgcaataccaaggaagtctccacgccaaattataccaagagatc
gaagtcgccagcgtggacgcttttcaaggcagggaaaaagatattatcatcatgtcctgc
gtacgttctaacgaacatcaaggaatcggatttttgagcgacccgcgccgtttgaacgtg
gctttgacgagagccaaatatgggctaattgtcgttggtaatccaaaggttctgagtaaa
cagccgctctggaatcatctgctggcattttacaaggagcgccgcgttctcacggagggg
ccactttccaatttgaaagaatctgctattcagttcgctaagccgaagaaacttataaac
gctcagaacccgggctcccacttcatgtcgacgtcgatgttcgacgcccgcgaggccatg
gtgccgggctccgtgtacgaccgcgcccggcccctgcgcgaccccctggcctacgtcggg
cccgagcgagcggccatgctccacgctcccgtgccgcccgcagccttcgccgcccaccgc
ggcctcacacggccccccatcaataacaatcagcgcagcgctcggaaacgacctccccga
ctatcgcaggaacctctgtcacagcagcccccgctgtctctctcccagggcgcctcccaa
ccggacttcagccaagagtctatcgctccggactgtccatcacaaccggacggtctactc
tcccaagactcctcgtaccagggcgggttccgtgcgcgttgcagccaatactga
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