Leptidea sinapis (Wood White): 126967058
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Entry
126967058 CDS
T09272
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lsin
Leptidea sinapis (Wood White)
Pathway
lsin03013
Nucleocytoplasmic transport
lsin03015
mRNA surveillance pathway
lsin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126967058
09122 Translation
03013 Nucleocytoplasmic transport
126967058
03015 mRNA surveillance pathway
126967058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsin03019
]
126967058
03041 Spliceosome [BR:
lsin03041
]
126967058
Enzymes [BR:
lsin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126967058
Messenger RNA biogenesis [BR:
lsin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
126967058
Spliceosome [BR:
lsin03041
]
Complex C
Other components
EJC/TREX
126967058
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
126967058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
126967058
NCBI-ProteinID:
XP_050667345
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All DBs
Position
12:2885378..2886977
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AA seq
425 aa
AA seq
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MADNDDLLDYEDEEQAEQQTTDGTTEAAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVD
CGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSENHVYVLVMCHT
RELAFQISKEYERFSKYMPGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILALVNN
KKLNLKHLKHFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKDIRPICKKF
MQDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCIA
LAQLLTDQNFPAIGIHRSMSQDERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNY
DMPEDSDTYLHRVARAGRFGTKGLAITMVSDENDAKILNEVQDRFDVNITELPEEIELST
YIEGR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggctgataacgacgatcttcttgactacgaagatgaagagcaagcagaacagcagacg
actgatggaaccaccgaagcggctcccaagaaagaggttaaaggctcgtatgtatcaatt
cacagttcaggatttagagattttcttttaaaacctgagattcttagagcaatagttgat
tgcgggtttgaacatccgtcagaggtccagcacgaatgtatacctcaggctgtacttggt
atggacatattgtgtcaagctaaatctggtatgggaaagacggctgtatttgtacttgcg
acactccaacaactggaaccatcagaaaaccacgtctacgttctggtcatgtgtcacaca
agagaactcgcttttcagattagcaaggaatatgagaggttctccaaatatatgccggga
gttcgagtttctgtcttctttggtggtatgcctatccagaaagatgaagaagtattaaaa
acagcatgcccccacatagttgttgggacacctggacgaatcttagccttggtaaataac
aaaaagttgaatttaaaacatcttaagcacttcatattggatgaatgtgataaaatgtta
gaatctctggacatgagacgtgatgtccaagaaatatttaggaacacacctcatggaaag
caagtgatgatgttttcagctacattaagcaaagatatccggccaatttgcaagaaattt
atgcaagatccaatggaagtttatgtagatgatgaagctaaactcactcttcatggactt
cagcaacattatgttaaactcaaagaaaacgagaagaataagaaactatttgagttactg
gatgttttggaatttaaccaagttgttatttttgttaaatcagtacaacgatgcattgcc
ctcgctcaactgctgactgaccagaacttccctgctattggaattcacagaagtatgagt
caagatgagcgcctatctcgctaccaacagtttaaagattttcaaaagagaatattagta
gcaaccaacctgtttggaagaggaatggatattgaacgagtcaacattgtttttaattat
gacatgcctgaagattctgatacttatctacatagagtggcccgagctggtaggtttggt
accaaaggacttgccatcaccatggtgtctgatgaaaatgatgccaagattctcaatgaa
gttcaggatagatttgatgttaatatcactgagttacctgaagaaatagaattatctact
tacattgaaggtcgataa
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