Leptidea sinapis (Wood White): 126968789
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Entry
126968789 CDS
T09272
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
lsin
Leptidea sinapis (Wood White)
Brite
KEGG Orthology (KO) [BR:
lsin00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lsin01009
]
126968789
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsin03019
]
126968789
04131 Membrane trafficking [BR:
lsin04131
]
126968789
03036 Chromosome and associated proteins [BR:
lsin03036
]
126968789
Enzymes [BR:
lsin01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
126968789
Protein phosphatases and associated proteins [BR:
lsin01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
126968789
Messenger RNA biogenesis [BR:
lsin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
126968789
Membrane trafficking [BR:
lsin04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
126968789
Chromosome and associated proteins [BR:
lsin03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
126968789
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
NMB0537_N
Motif
Other DBs
NCBI-GeneID:
126968789
NCBI-ProteinID:
XP_050669840
LinkDB
All DBs
Position
16:13439686..13466129
Genome browser
AA seq
1085 aa
AA seq
DB search
MSTPILNQARNSGGESKIATTSIVTRNAARKAKIQTRAAAAGKARPSALIVNAKRKAQLK
KRTVLETVLKDHYQIAMDSKMKVKGATGLVTDPRMLEHRCLWDDNYPENPERLKSVLRRC
QELNLIDQCKAIRARPATKEEIIKLHCSSVIDVLESTNNNNNMEYLEELSSRYDAIYFHP
STHELALLAAGSCIELVDAVVRGDVMNGAALVRPPGHHAMRAEPCGYCFYNNVALAAAHA
VHKLQLNRILIVDWDVHHGQATQQMFYDDPRVVYFSIHRYEHGTFWPNLRESNFDYVGAG
PGAGRNFNVPLNKTGMGDADYLAIWHQLLLPMAYEYQPELVLISAGYDAAFGCPEGLMEV
TPACYATLTHLLMGVTSRVCVVLEGGYCARSLGEGAALTLRTLLGHSPPTLQPLSEPSDE
IRTSILNCIYTHKKYWRCFNYQPSFSSDTTVKNVCDVTKVKHNVTVQYLGDETKPAKYET
RNCYPVQDEGTKRLIEERLAYLESVTDLTLPQHAVGYVYDSAMLKHENICEPGHVECPDR
ILRMHERHREFGLLARLHIIQPMPCTDDQILRVHNEEHLKRLKNFSTMKLRDLNQKKESF
DSVYFHPDSLESAAMAAGCAVQMVDAVLSGRCGAGVCVVRPPGHHAGATTPCGFCLLNNA
VVAATHAVTHHGVRRVLLVDWDVHHGNGTQDLTYDDSRILYLSIHRYDKGAFFPQSRDAD
VTAVGAHTARGFNVNVPWNKRGMGDAEYLAAFTQVVLPIAYEYNPELVIVSAGFDAAIND
PLGKCNVTPECYGIMTHMLRGLAGGRVVLCLEGGYNITSSSYAMTMCTKALLGDPILRQY
DPNITCHPSAVESINDVIQVHSKYWKSLKFQLALPIENVLKEKSEAKADSLDSAMGRLSL
SKCSDGIHCGTDDEDETGEEKEIKKENEVDPGKEDEQPNAGGSGGKQTLVDFLADNMQAI
ADGEMFAVVPLASCPHLETLYAIPSDVAFRPGAKCEQCDHTLENWVCLHCYVTACGRPTV
NGHMQAHYSATHHPLSLSLADLSVWCYPCDAYVDNPLLYDAKNNAHRCKFGEDMPWCYRD
TIDMH
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgtctactccaatactaaatcaagcccgtaattctggtggcgagagcaagattgctacc
acgagtattgtaactagaaatgctgcaagaaaagccaaaatacaaacacgtgcagcagcc
gctggtaaagccaggccgtcagctctgattgtcaatgctaagagaaaggctcaactaaag
aagaggacggttttggagacagttttaaaggatcattatcagatagcgatggattctaaa
atgaaagttaaaggagctactgggctggtgacagaccctcgcatgttagaacacagatgt
ttgtgggacgacaactatccggaaaatccagagcgactgaaaagtgttctgagaaggtgt
caagagctcaatttaatagaccaatgcaaggcaattagagcaagacccgcgaccaaagag
gaaataattaagttacactgttcatctgtcatagatgtgttagagagtacaaacaataat
aataacatggagtatttagaagagttatcttctcgttatgatgccatatactttcatccg
agtactcatgagctggcgttgctagctgccggctcgtgcatcgagctggttgatgcagtg
gtacgcggtgacgtgatgaacggtgcggcgttggtgcgaccacctggccatcacgccatg
agggcggagccctgcggctactgtttctacaacaacgtggctctagctgcggcgcacgcc
gtacacaagctacaactgaacagaatactgattgtcgactgggatgtgcatcacggccag
gcgacgcaacagatgttctatgacgatcccagggtcgtatacttctcaatccaccgctac
gagcacggcacgttctggcccaacctgcgcgagtccaatttcgactatgtgggggcgggg
ccaggagcggggcgtaatttcaacgtgcccctcaacaagaccggcatgggagacgcagac
tatctggccatctggcaccagttgttgctacccatggcctacgagtaccaaccagaactg
gtgctgatctcagcgggctacgacgcagcgttcggttgtccagagggtttaatggaagta
accccagcgtgctatgcgaccctcacacacttgctaatgggtgtgacgtcacgcgtctgc
gtagtgctagagggaggatattgtgcacggtcgctcggcgagggggccgcgcttacattg
cgcacgctacttggacacagtccgcccaccttgcagccactctcagagccctcagacgaa
attcggacatcgatcctcaattgtatctatacccacaagaagtattggcgctgcttcaac
taccagccgagcttcagctccgatacgaccgtcaagaacgtgtgtgacgtcaccaaggtc
aagcacaacgtcacagtacagtacctcggcgatgagaccaaaccggccaagtacgaaact
aggaactgttatccggtacaggacgaagggactaagcgactgattgaagagagattagcg
tatttggaatctgtgacggacttgacgctaccgcaacacgctgtcggctatgtgtatgac
agtgcaatgttgaaacacgagaatatatgcgaaccaggccacgtggaatgtccggatcga
atcctgcgcatgcacgaaagacaccgggagtttggtctgctggcgcggctgcacatcatc
cagcccatgccgtgcacggacgaccagattctccgggtgcataatgaagaacatcttaaa
agattgaaaaacttctcgacgatgaagctccgcgatttgaaccagaagaaggagagcttc
gactctgtctacttccaccccgactcattggagagcgctgccatggctgccggctgtgct
gttcagatggtggatgctgtgttatcgggtcgttgcggagcaggagtatgcgtggtgcgg
cctcccggccaccatgctggtgccaccactccgtgcgggttctgtttgttgaacaacgcc
gtggtggcagccacccacgccgtcacccaccacggcgtcaggcgcgtcttgttggtggac
tgggacgtgcaccacgggaacgggacgcaggacctcacttacgatgatagcaggattctg
tacctgtcgatccaccgctacgacaagggcgcgttcttcccgcagtcgcgcgacgctgac
gtcacggcggtgggcgcacacactgcgcggggcttcaacgtgaatgtaccatggaataag
cgcggcatgggcgacgcggagtacttggcagcgttcacgcaagtggtactgccgatagca
tacgagtacaacccggaactggtgatcgtgtctgctgggttcgacgcggccatcaacgat
cctctcggcaaatgcaacgtgacaccggaatgctacggcataatgacgcatatgctccgt
ggtctagccggagggagggtcgtactctgcctagagggaggatacaatatcaccagctcc
tcgtatgccatgacaatgtgcaccaaagctttgctcggcgatccgatactacgacagtac
gatcccaatatcacttgccatccttccgccgtagaatctatcaatgacgtcattcaagta
catagtaaatattggaagagccttaagttccaattagcgcttcctatagaaaatgttttg
aaggagaaatctgaagcaaaggcagattctttagatagtgcaatggggaggcttagttta
agtaagtgttcggacggtattcactgcgggactgatgacgaggacgagactggagaggag
aaggagataaaaaaggagaatgaagttgaccctgggaaagaagatgaacagccaaatgct
ggtggttcaggcgggaagcagacactagtggattttctggctgataatatgcaggcgata
gcggacggggagatgtttgccgtagtgccgctggcctcgtgtccacatctcgagacgctg
tacgccataccgagtgacgtggcgttccggccaggcgccaagtgtgagcaatgtgaccac
acgctcgagaactgggtgtgcctgcactgctacgtgaccgcctgtggacggccgactgta
aacggccacatgcaggcgcactactccgcgacacatcatcccctgtccctttcgctcgca
gatctctctgtatggtgctatccttgtgacgcgtacgttgacaatccactgttatatgac
gcaaagaacaatgcacacagatgtaagttcggcgaagacatgccttggtgttaccgtgac
acaatcgacatgcattga
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