Leptidea sinapis (Wood White): 126969108
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Entry
126969108 CDS
T09272
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
lsin
Leptidea sinapis (Wood White)
Pathway
lsin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126969108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsin03019
]
126969108
Enzymes [BR:
lsin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
126969108
Messenger RNA biogenesis [BR:
lsin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
126969108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
DNA_pol_A_exo1
Motif
Other DBs
NCBI-GeneID:
126969108
NCBI-ProteinID:
XP_050670374
LinkDB
All DBs
Position
17:complement(552309..560329)
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AA seq
327 aa
AA seq
DB search
MEITKKNFSEQLDRIAKDIKQSSFIGFDAEFTALLTGDAFKHSLFDTCEERYNKIKDGAG
KMIMTQVGLTMFQYERDLDTYNAVGYTFHLCPQYFGDVDQSFIFQASTLRFLCRHNFDFN
KFTYDGLPYLSKAEEENVKLQLMEKQLFNHLNSSLEMSGERILQHHCSEVSKWIANSDDD
TMYIDIEDPVLRYLLHNELRLRFHNILTTDSLGNSNKVLIYRDKFVEGANSAPMQILEEN
LLSHLRGFSQILNILSECEKPIIGHNIFMDMILLHSQFIGPLPKQYSTFKKNINNLFPVI
FDTKYISHEMAKKLTMDEVWKSNALQE
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcacaaaaaaaaacttttccgaacaattagaccgaatagccaaagatattaaa
caatcaagttttattggatttgatgcagaatttacagctcttttaacaggcgatgctttt
aaacacagcctttttgatacctgtgaagagaggtacaacaaaataaaagatggagctggg
aaaatgataatgacccaagttggtttgacaatgttccagtacgagagagatttagataca
tataatgcagttgggtacaccttccacctatgtccacagtattttggagatgttgatcag
tcattcatatttcaagcatccacattacgttttctgtgccggcataattttgacttcaac
aagtttacttatgatggtctgccatatctaagtaaagctgaggaagaaaatgtgaaactc
caattgatggagaaacagcttttcaatcatttaaacagttcattagaaatgagtggtgaa
aggatactgcagcatcattgttctgaagtgtccaagtggatagcaaatagtgatgatgat
acaatgtacattgatattgaagacccagttctccgatatttattgcacaatgagttaaga
ttgcgttttcataatatactcacaacagatagcttaggtaatagtaataaggttctgata
tacagagataaatttgttgaaggtgcaaacagtgcacctatgcaaatactagaagagaat
ttgttgagccatctccgaggcttctcacagattctaaacattttgtctgaatgtgaaaag
ccaattattggacacaatatatttatggacatgattcttctgcacagtcagttcataggt
cctttaccaaagcagtactctacattcaagaaaaatataaacaatttgtttccagtcatt
tttgacacaaaatatatttcacatgagatggcgaagaaattgacaatggatgaagtgtgg
aagtccaatgcactgcaagagtaa
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