Leptidea sinapis (Wood White): 126969194
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Entry
126969194 CDS
T09272
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lsin
Leptidea sinapis (Wood White)
Pathway
lsin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126969194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsin03019
]
126969194
03041 Spliceosome [BR:
lsin03041
]
126969194
Messenger RNA biogenesis [BR:
lsin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
126969194
Spliceosome [BR:
lsin03041
]
Complex B
Other components
Prp19-related factors
126969194
Complex C
126969194
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_15
TPR_8
TPR_12
NRDE-2
DHR-2_Lobe_A
TPR_10
ARM_TT21
PPR
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
126969194
NCBI-ProteinID:
XP_050670468
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Position
17:complement(7501513..7504400)
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AA seq
842 aa
AA seq
DB search
MPLMDEKDAEIYFSEEDLPYEEEILRNPFSVKHWLRYIEHKKGAPKNEINLIYERALKEL
PGSFKLWYNYLKVRRNQIRGRCITDPSYEDVNNCFERSLVFMHKMPRIWMDYCSFLTDQC
KITATRKAFDSALRALPITQHHRIWPLYLGFLKKHNIPETAVRVFRRYLKLSPEDTEEYI
DYLISIDKLDEAAVKLAQIVNNENFQSKHGKSNHQLWNELCELISKNPDKIHTLNVDAII
RGGLRRYTDQLGHLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE
LSLSKKMEEVAKKPHPSEDDDIDLELRLARFEYLMERRLLLLNSVLLRQNPHNVAEWHKR
VKLYEGKPNEIIDTYTEAVQTVDPKLAVGKLHTLWVGFAKFYENNEQIEDARLIFEKATQ
VSYVKVEDLASVWCEWAEMEIRHENYEDALKLMQRATVLPSRKVAYHDENETVQMRLYKS
LKVWSMYADLEESFGTYKSCKAVYDHIIDLKIATPQIIINYGLFLEEHNYFEEAFRAYEK
GIALFKWPNVYDIWNTYLTKFLKRYGGSKLERARDLFEQCLEHCPPEFAKSIFLLYAKLE
EEHGLARHAMSVYERATTAVLPEQMFEMFNIYIKKAAEIYGVPKTRQIYEKAIETLSEEN
SREMCIRFSEMETRLGEIDRARAIYAHCSQMCDPRITADFWNTWKEFEVRHGNEDTMREM
LRIKRSVQATYNTQVNMMSAQMLGSSTQAAGTVSDLAPGMKDGMRLLEAKAAEMAVHNKG
NIMFVRGETQGLKESADKVVNPDEIDIDEESDNSGDEDGPIDPVEKKEIPAAVFGGLLPE
KE
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgcctcttatggatgaaaaagatgctgaaatatactttagcgaagaagacctaccttat
gaagaagagattctcagaaatccattttcagtaaagcattggcttagatatattgagcat
aaaaaaggtgctcctaaaaatgagattaatttaatctatgaaagagcactcaaagagctt
cctggatcatttaaactttggtataattatctaaaagtgaggagaaatcaaataagaggt
cgttgtattacagatccatcatatgaagatgtcaataactgctttgaaaggtcattagtt
tttatgcataaaatgcccagaatatggatggattattgcagttttttaactgatcagtgt
aaaataacagcaactcgtaaagcatttgacagtgcattgagggccctgccaataactcag
catcatagaatttggcccctctatcttggttttctgaaaaagcataatattcctgaaaca
gcagttcgagttttcagaaggtatttaaaattgtcacctgaagatactgaagaatatatt
gactatttaatatctattgataagttagatgaagctgctgttaaattagctcaaattgtg
aacaatgaaaactttcaatccaaacatggcaaatctaaccatcaactttggaatgaacta
tgtgagttaatttcaaaaaatccagataaaattcacacactaaatgtagatgccataatt
agagggggactaagacgctacacagaccagctaggtcacttatggaattctttagctgat
tattatgtaaggagtggtctctttgaaagagctagagatatttacgaagaagctatacaa
acagtcactactgtgcgtgattttacacaagtatttgatgcatatgcacagtttgaagag
ttgagtttaagcaagaaaatggaagaagttgctaagaagcctcatccaagtgaagatgat
gatatagacttagaattaaggttagctagatttgagtatctaatggagcgtagattactg
cttcttaactctgtacttttaagacaaaatccacataatgtagcagaatggcataaaaga
gttaaactgtatgaaggaaaacctaatgaaataattgatacttatactgaagcagttcaa
actgtagatccaaagttggctgtaggtaagttacataccctttgggtgggttttgcaaaa
ttttatgaaaacaatgaacaaatagaagatgccagattaatttttgaaaaagctacgcaa
gtcagttatgtaaaagttgaagatctggcttctgtatggtgtgaatgggcagaaatggaa
attagacatgaaaattatgaagatgcattaaaattaatgcaacgtgctactgttctacct
agtagaaaagttgcttaccatgatgaaaatgaaacagtccaaatgaggctttataagtca
ttaaaagtgtggtcaatgtatgcagatttggaagaaagttttggaacatataaatcatgt
aaagctgtttatgaccacattattgatttaaaaatagctacacctcaaataataatcaat
tatggtttattcttagaagaacataattattttgaagaagcttttagagcatatgaaaaa
gggattgctctttttaaatggccaaatgtttatgacatatggaacacctatttaacaaaa
tttttaaaaaggtatggtggaagcaaacttgaaagagcaagagatctatttgagcaatgt
ttggaacactgtcctccagaatttgctaaatcaattttcttactttatgccaaactggaa
gaagaacatggattagctaggcatgcaatgtctgtgtatgaacgtgccactacagctgtt
cttcctgaacaaatgtttgaaatgtttaatatatatattaaaaaagctgcagaaatatat
ggtgtaccaaaaacaagacaaatttatgaaaaagcaattgaaacattatctgaggaaaac
tctagagaaatgtgtattcgtttttctgaaatggagacacgtcttggtgaaattgacagg
gccagagcaatatatgcccattgtagtcaaatgtgtgatccaagaataaccgcagatttc
tggaacacttggaaagaatttgaagtaaggcatggcaatgaggacactatgagagaaatg
ttacgtataaagagaagtgtacaagccacttacaatacacaagtaaatatgatgtcagca
caaatgttaggctcatcaacacaggctgccggtacagtatctgatctagctccaggtatg
aaagatggtatgagattactggaagctaaagctgcagaaatggcagttcacaataaaggt
aacattatgtttgttaggggagaaacacaaggtcttaaggagagtgctgataaggtggtt
aatccagatgaaatagacattgatgaagaatctgataacagtggagatgaagatggccca
attgatccagttgaaaagaaagaaattccagctgctgtatttggaggcctgttgccagaa
aaagagtaa
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