Leptidea sinapis (Wood White): 126970019
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Entry
126970019 CDS
T09272
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
lsin
Leptidea sinapis (Wood White)
Pathway
lsin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126970019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsin03041
]
126970019
Enzymes [BR:
lsin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126970019
Spliceosome [BR:
lsin03041
]
Complex C
Other components
Step II factors
126970019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
Flavi_DEAD
nSTAND3
PhoH
AAA_30
TsaE
Motif
Other DBs
NCBI-GeneID:
126970019
NCBI-ProteinID:
XP_050671660
LinkDB
All DBs
Position
1:30774960..30797157
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AA seq
1268 aa
AA seq
DB search
MEELVKLEHLSLVSKICTELDNHLGLNDKDLAEFIIDLSEKHPNFDEFKKALIENGAEFS
DSFMSNLLRIIQHMKPTATSEQSNCKEINQSNPLANKFPGLAIPNDKPPVFSDEDSDSNE
KKNDRTTAKDIFKNEKVFVNDDVVDKAMADLEALAPSKSSVNNDEHKSALKKDIKEEKSR
RPLSRERKSRRSRSRDKRSRSKERRSRSRGRRSRSRNKRSRSRGRRSRSRDRRSRSRDRR
SRSRDRRSHSRGRRKRTRSRDRNRKRSRSRGHRSRSRGHRSRSRSHSRERHRDHGKKLRK
KSPDIELSDDPEPGKIYSGRVANIVPFGCFVQMEGLRKRWEGLVHISQLRAEGRVTNVSD
VVSRGDKVKVKVISLAGQKVSLTMKDVCQETGKDLNPASHAHLEAEREGRNPDRPPPAAT
VLAGLQGLDPDEDSSRKRVTRISSPERWEIKQMISSGVIDKSELPDFDEETGLLPKDEDG
EADIEIELVEEEPPFLQGHGRALHDLSPVRIVKNPDGSLAQAAMMQSALAKERREQKMLQ
REQEMESMPTGLNKNWIDPLPESEGWSLAANTRGTGIITQDLPEWKKHVIGGKKSSFGKK
TNLSLLEQRQSLPIYKLKDELIKAISDNQILIVIGETGSGKTTQITQYVAECGLSARGRV
ACTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLMD
LDLKTYSVIMLDEAHERTIHTDVLFGLLKQAVQKRPELKLIVTSATLDAVKFSQYFFAAP
IFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREPPGDILLFLTGQEEIDTACEIL
YERMKSLGPDVPELIILPVYSALPSEMQTRIFEPAPPGSRKVVIATNIAETSLTIDGIYY
VVDPGFVKQKVYNSKTGMDSLVVTPISQAAAKQRAGRAGRTGPGKCYRLYTERAYRDEML
PTPVPEIQRTNLATTVLQLKTMGINDLLHFDFMDAPPVESLIMALEQLHSLSALDSEGLL
TRLGRRMAEFPLEPNLSKILIMSVALQCSDEILTVVSMLSVQNVFYRPKDKQALADQKKA
KFNQPEGDHLTLLAVYNSWKNNKFSNAWCYENFVQIRTLKRAQDVRKQLLGIMDRHKLDV
VSAAKNTVRVQKTICSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVIYHE
LVQTTKEYMREVTTIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRI
SRVRRRRN
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atggaggaacttgtgaaactagagcatttgtcactcgtttcaaagatctgcacagaattg
gacaatcatttgggtctaaatgacaaagatttggctgagttcataatagatttgtctgaa
aaacatccaaattttgatgagttcaaaaaggctcttattgaaaatggtgccgagttttcg
gattcatttatgtcaaatttgcttcgtatcattcagcatatgaaacccactgcaacgtca
gagcagtcaaattgtaaagagattaaccaatcaaacccattagcaaacaaattccctggt
ttagctataccaaatgacaagccacctgtcttttctgatgaagacagtgatagtaatgaa
aagaaaaatgacagaacaacagcaaaggatatatttaagaatgaaaaagtttttgttaat
gatgatgttgtggacaaagctatggcagacttagaagcccttgcaccatccaagtctagt
gtgaataatgatgaacataaatctgcacttaaaaaggacataaaagaagagaaaagtaga
agacctctatctcgtgaaagaaaaagtagacgtagcagaagtcgtgataaaaggagtagg
agtaaggaaagaaggagtaggagtagggggagaagaagtcgaagtagaaacaagagaagt
cgaagtagaggcagaagaagccgtagtagagatagaagaagccgtagtagagacagaaga
agccgtagtagagacagaagaagtcatagcagaggtagaagaaaaagaaccaggagtcga
gatcgaaatagaaaaagatcaagatcccgtggccacagatcaagatcccgtggccacaga
tcaagatctagatcacactccagagaaagacacagagatcatggtaagaaactgagaaaa
aagagtccagacattgaattgagtgatgatccagagccaggaaagatatacagtggaaga
gtggcaaatattgttccatttggttgttttgttcaaatggaaggcctgcggaagaggtgg
gaaggtctggtccatatttcccaattgagggctgagggaagagtcacaaatgtgtcagat
gttgtgtccaggggagacaaagtaaaagtgaaagtgatatccttagctgggcagaaagta
tcactcacaatgaaagatgtctgccaggaaactggaaaggatctcaatccagcgtctcat
gctcatttggaggcggagcgtgaaggtcgcaaccctgaccggccccctcccgcggcgacc
gttctggcggggctgcaaggcctggatcccgatgaggactccagtaggaagagggtcacc
aggatatctagccccgaacgatgggagattaaacagatgatctcatcaggcgtgattgat
aaaagcgagcttcccgacttcgatgaggagacaggtttgttgccaaaagatgaagatggt
gaggcagatatagagatagaactcgtagaagaagagccaccattcctacagggccacggg
agagccttacacgacctatctccagtaagaatcgtgaagaaccctgacggatcactcgct
caggcagccatgatgcagtcagcacttgcaaaagagagacgagaacagaaaatgcttcag
agagaacaagagatggagagtatgccaactggtcttaacaagaattggattgatccctta
ccagagtctgaaggctggtcattagctgcaaatacgagagggacagggataattactcag
gatttacctgagtggaagaagcatgtaataggtgggaagaaatcctcattcggaaagaag
acaaatttgtcgttattagaacagaggcagtccttacctatttataaattgaaggatgaa
ttgataaaggcaatatcagataatcaaatactgatcgtgattggtgagactgggtcaggc
aagaccacccagatcacacagtatgtggcggagtgtgggttgagcgcgcgggggagggtc
gcttgcacgcagcccaggagggtggccgccatgtcagtggccaagagggtggctgaggag
tttggctgcaggcttggccaggaagtgggctatacgattcgtttcgaagactgcacttcc
cctgaaactgttatcaagtacatgacagatggtatgttgctccgcgaatgtctcatggac
ctagacctgaaaacctactccgtgatcatgttggacgaggctcatgagaggacaatccac
actgacgtcctattcggactgctcaaacaagctgtccagaagagaccagagctcaaacta
attgtcacatcagccacacttgatgccgtcaaattctctcagtacttcttcgctgcacca
atcttcaccatccctggacggaccttccctgttgaagtcttatacacaaaagaacccgaa
acagattatttggatgcttcgctgataactgtgatgcaaatacacctgagagaacctccc
ggagatatacttctgtttttgacgggccaagaggaaattgatactgcttgtgagattctg
tatgagagaatgaagtctcttggcccggatgtgccagagttgataatattgcctgtgtac
tcggctttaccttcagagatgcagacaaggatcttcgagccagccccgcctggatccagg
aaggtggtgatagccacgaatattgctgagacatctttaaccattgatggtatttactat
gtcgttgaccctggatttgtgaagcaaaaggtgtataactctaagacaggaatggattca
ttggttgtgacaccaatatcacaggcggcagcgaaacaacgcgccggaagagcgggaaga
accgggcccggcaagtgttaccgactgtacacggagcgtgcctaccgggacgaaatgctg
ccgacaccggtgccggagatacaacggaccaacctcgccactactgtgctgcagctgaag
accatgggtatcaatgacctgttacacttcgacttcatggacgcaccgcccgtggagtct
cttatcatggcgctggaacagctgcactctctgtctgcgctcgactcggaggggctgctt
actaggcttggcagacggatggcagagtttccgttagagccgaatctctcaaagatcctg
attatgtcagtcgcgctgcagtgttccgacgaaatactgactgttgtgtccatgctgagc
gtgcagaacgtcttctaccggcccaaggacaagcaagccctggccgaccagaagaaggcc
aagttcaaccagccagaaggtgatcacctcactttgctggccgtctacaacagctggaag
aacaataagttttccaacgcgtggtgctacgagaacttcgttcagatacgaacactgaag
cgggctcaggatgtgaggaaacagctcctgggtatcatggacagacacaagttggatgta
gtgtctgccgccaagaatacagttcgcgttcagaagacgatttgctcgggcttcttccgg
aacgcggccaagaaggaccctcaggaaggttaccgtaccctcgtggacagccaagtcgtg
tacatacatccttccagcgcgctcttcaacagacaaccggaatgggtaatatatcatgaa
ctggttcaaacaaccaaggagtacatgcgagaggtcaccaccatagaccccaagtggcta
gtggagttcgccccagctttcttcaagttctcggaccctaccaagctgtccaagttcaag
aagaaccaacgcctggaaccattgtacaataaatacgaagaaccaaatgcttggagaata
tctcgcgtccgtagaaggagaaattaa
DBGET
integrated database retrieval system
