Leptidea sinapis (Wood White): 126970289
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Entry
126970289 CDS
T09272
Name
(RefSeq) mismatch repair endonuclease PMS2 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
lsin
Leptidea sinapis (Wood White)
Pathway
lsin03430
Mismatch repair
lsin03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lsin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
126970289
03460 Fanconi anemia pathway
126970289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsin03400
]
126970289
DNA repair and recombination proteins [BR:
lsin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
126970289
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
126970289
NCBI-ProteinID:
XP_050672074
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Position
20:complement(4414170..4423204)
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AA seq
847 aa
AA seq
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MEINNAGANNNIRRIGSETVHKICSGQVVLSLAVAVKELLENSLDAGAINVDIRLKNYGV
DLIEVSDNGSGVTEDNFEALTLKHHTSKLSEYSDLLDVSSFGFRGEALSSLCALANLTIT
TRHRTAEYASKIQYDHKGNIINKTPCSRQVGTTVTLSNLFCTLPVRQKELHKNVKREFNK
LTNLLYAYCLISKGIKITCSNQTNANSKSIVVASSGSSHKDNIASVFGLKQLQGLLEIKT
EHVSSIKDNILKGLSGEINECQEDVTIEDIEIDLSEDSNDAEAKDSQESQDITLSQKSMG
YKNTPSPVNLEGFISSCEHGCGRSSTDRQYFYVNSRPCEPVKVMKLVNEIYKQFNVNQYP
FIFLNINIERVTVDINLSPDKRKVFLTKEKAILDVIKASISKLFESIPRTVRVETSLNLK
DKEKAVCKIDQPRIFNSFMQQFSVKQGKESNSVSCTKSINESKNVDLKRKSTSILDAFIS
KTKRVHEDTDQQQDLSYKKNVIETTKNDEDLEILDNNEVRPDEVKVAPTDIVYLDYRENI
PETQVRNVSDVICEESHTIYCKPKTVKKQISDISSIAPKPNTKKVVTDKDEIGKSNRRLI
NFKTSLNHVQAMVEIYKKNINSSLPERIKFRSSIDPVFNKKCEEELSREISKDSFKQMEI
LGQFNLGFIITRLEDDLFIIDQHATDEIYNFESLQKSTEITSQKLVIPQQLELSGMNEQI
LIDNVSIFKKNGFTFDIDENSPPTKRVKLLTIPMSKNWIFGKDDIEELLFMLKESQSEYC
RPSRVRAMFASRACRKSVMIGTALSKSDMRKLVDHMAEIDKPWNCPHGRPTIRHLVNIAM
VHTSKNQ
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atggagattaataatgctggcgcgaataataatattagacgtattggttccgaaactgtc
cacaaaatatgttctggccaggttgtgctaagcttagctgtagccgttaaagagctatta
gaaaactcattagatgcaggagcaattaatgttgatataaggttaaaaaattatggagtt
gatcttattgaagtttctgacaatggatctggtgtcacagaagataactttgaggcttta
acactcaagcaccatacttccaaactgagtgagtattcagatttgctagatgtatccagc
tttggattcagaggtgaagctttgagctcactttgtgcacttgctaatcttacaataacg
acaaggcatagaactgctgagtatgcatctaaaatacagtatgatcacaagggaaatatt
ataaataaaacaccctgttctaggcaagttggaacaacagtaactctatcaaaccttttt
tgcacattgccagtaaggcaaaaagaattacataaaaatgtcaagagggagtttaataag
ttgacaaatttgttgtatgcctattgcttaatatctaagggaataaagataacttgtagc
aatcaaaccaatgctaactcaaaatctatagttgtagcttcatctggatcatctcataaa
gataatatagcttctgtgtttggcttgaaacagttacaaggattattggaaataaaaaca
gaacatgtaagtagtatcaaagataacattttaaaaggattatcgggcgaaattaatgaa
tgtcaagaagatgtcaccatagaggatatagaaattgatttgtctgaggactctaatgat
gctgaagcaaaagactcccaagaatctcaagatatcacactatcacaaaagtcaatgggt
tacaaaaatactcccagtcctgttaacttagaaggatttatttcatcttgtgaacatggc
tgtggcagatccagtacagacaggcaatacttttatgtaaattcaagaccatgtgaacct
gtcaaagttatgaaacttgttaatgaaatttacaaacaattcaatgttaatcagtatcca
tttatatttctcaatattaatatagaaagggttaccgtcgacataaacctgagtcctgat
aaaagaaaagtatttttaactaaagagaaagctattttagatgttattaaagcatctata
tcaaaactatttgaaagtattcccagaacagtaagagttgagaccagcttaaatttaaaa
gataaagaaaaagcagtttgtaaaatagaccagcctagaatttttaactcttttatgcaa
cagttttcagtaaagcaaggaaaggagtcaaattcagtgtcttgtactaaatctataaat
gaatctaaaaatgtcgatttaaaacgaaaatctacaagtattttagatgcattcattagt
aagacaaaaagagtacatgaagacacagatcaacaacaagatttaagttataaaaaaaat
gtgatagaaacgacaaaaaacgatgaggacttagaaatactagataataatgaagtaaga
ccagatgaagtcaaggtagcaccaacagatattgtgtacttagactatagagaaaatata
ccagaaacacaagtaagaaatgtttcagatgttatttgtgaagagtcccacacaatatat
tgtaaaccaaaaactgtaaagaaacaaatatcagatatttcaagtattgcaccaaaacca
aacactaaaaaggtagtaacagataaagatgagattgggaaatctaatagaagattaatt
aacttcaaaacatccttaaaccatgttcaagccatggttgaaatttataaaaaaaatatt
aatagttcattgccagagagaataaaattcagaagttcaattgatcctgtgttcaataaa
aaatgtgaagaggaattaagcagagaaatatctaaggattcttttaagcaaatggaaatt
ttaggtcagtttaatttgggttttataatcactcggttggaagatgacttatttattatt
gaccaacatgcaacagatgagatatataattttgaatctttacaaaaatctactgaaatt
actagccagaaattagtaatcccacaacaattagaattatctggaatgaatgaacaaatt
ttaatagacaatgtgagtatatttaaaaagaatggattcacttttgacatagatgaaaat
tctccaccaacaaaaagagtaaagttattgacaatacccatgtcaaaaaattggattttt
ggtaaagatgatattgaagaactgttatttatgttgaaggaatctcaatcggaatactgt
aggccaagtcgagtgagagcaatgtttgcttcaagagcctgtagaaaatcagtcatgatt
ggaactgctcttagcaaatctgacatgcgcaaacttgtagatcacatggcagaaattgat
aaaccatggaactgtccccatggaagaccaaccatacgtcatttggtgaacatagcaatg
gttcacacaagtaaaaatcaatga
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