Leptidea sinapis (Wood White): 126972044
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Entry
126972044 CDS
T09272
Name
(RefSeq) transient receptor potential cation channel trpm isoform X1
KO
K04978
transient receptor potential cation channel subfamily M member 3
Organism
lsin
Leptidea sinapis (Wood White)
Brite
KEGG Orthology (KO) [BR:
lsin00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lsin04040
]
126972044
Ion channels [BR:
lsin04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
126972044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSDAT_euk
LSDAT_prok
TRPM_tetra
Ion_trans
Noelin-1
BLOC1_2
XhlA
Motif
Other DBs
NCBI-GeneID:
126972044
NCBI-ProteinID:
XP_050674568
EnsemblRapid:
ENSLSNG00005002134
LinkDB
All DBs
Position
25:7423253..7734497
Genome browser
AA seq
1740 aa
AA seq
DB search
MSIQKCLLDNSSRMIKAMSNAKSSNNEVKTGVQSGLKRVGLAMLSLSIPIIDDKKKKTTR
SWIESTFQKRECKCFIPSPKDEHICWCGLSKTAHGSSIPIGPAGESWLPARHTQPSSTDA
YGTVEFQGGPHPTKAQYVRLSHDTRPELIVQLLTREWALERPKLLITIQGGKANFDLQPK
LKKVLRKGLLKAAKTTGAWIFTGGTNTGVTRQVGDALQLERSQRAGRVVSIGIAPWGIVE
GANELIGRGRDVPYHAIASPRSKLAVLNNRHAYFLLVDNGSIGRYGAEIVLRRKLEKYIA
AQKLHPYTHSSTPVVCLVIEGGTNTVRAVLEYVTDSPPVPVVVCDGSGRAADLIAFVHKY
ASETGEQSVLEAMRDYLISTIQKTFEVGLQQAECLYGELLQCTKKKNLITVFRIQERAEG
GEVQELDQVILTALFRAQHLSASEQLSLALTWNRVDIARSEIFVYGQEWPPGALDEAMMQ
ALEHDRIDFVKLLLENGVSMRKFLTIPRLEELYNTKSGPSNTMQYILRDVRPHLPRGYIY
TLHDIGLVINKLMGGAYRCYYTRRKFRPIYAKVMNKSVNVHRNSASFTRHNNAGGLSLIA
GFMPVTTEMALFDYPFNELLMWAVLTKRHQMALLMWTHGEEALAKSLVACKLYKAMAHEA
AEDDMETEVYEELRHYGKEFETKALELLDYCYRQDDDQAQQLLTCELQNWSGQTCLSLAV
AANHRALLAHPCSQIILADLWMGGLRTRKNTNLKVILSLLCPLYILQLEFKSKEELQLMP
QTEEEHLENESLEDDRSNKDPNDAEQALIGSGECETRVDQNGKVGKIGWEVSYRELPEYH
APEDKRMRPLRLRKKIYEFFTAPITKFWADSIAYILFLLMFTYTVLVKMDPTPSWPEIYS
ICYIITFLCEKIREIVTSEPVAIRHKFSVWAWNMWNTYDAGFIIFFLVGLTLRFRPASMD
VGRVIYCVDIIYWYLRILNILGVNKYLGPLVTMMGKMVKNMIYFVVLLLVVLMSFGVARQ
AILYPDKEASWYLIREIFYQPYFMLYGEVFAPDIDPPCGTNVGDQKCVTGRWITPIAMTV
YLLVANILLINLLIAGFNNIFNEVNEVSHQVWMFQRFTVVMEYEQKPVLPPPLIIFCHIY
ATCKWITRNVSHKRFQYDNGLKLFLEKEDLERLYDFEEECVEGYFREQEVKLSNSLEERV
RSTTDRVENITTKMEDLNQKANLQIQSVQNVEFRLRKLEDVAEQTMKYLAVIHRFMATHP
SLVNRGSTDTLGPTPPTFQAAAARLRTASDRSEVLSDSETGVARFTVRPVQEEDEASQPS
DDEMPQSGPEVVADKEHEGDSESTSSGDNAAAPDVTVIKQPVIVAPIRQRSSDSNRTEPS
DDKKVQSSTDDAFLPEVREIPSDGNSLRPRTISASTRRTANARRRSEGGNDVGMGGHYSA
QHLAPRRQHSQTHSEPDNSAVDATSLHNSVTGWEATGGATGMPSTRSRVGGAPRSLLLAM
HEYTSITDELETVYGLFSPPHTPRTPIATRLLSPARAASPSQRRRHASEMSNPEFALYME
KEHLRGAEEDDYLIMENLIQRRLEMESVLGRYEEEEGAAEGGQMGEISISVCVNTSADDT
MPQQGPANPTTTLLTVSDRRLPHQRHSLRRSSAIDSRELPSPLQPLLGDDTCGEVLLPVP
RQPSGDTNASSDLSLSHMVSENLPPRPSIVLDSSQLPRQRSAEQPPTPQPPAPARPETMC
NT seq
5223 nt
NT seq
+upstream
nt +downstream
nt
atgagtattcagaagtgtcttttggataactctagcaggatgataaaggcgatgtccaac
gctaaatcatccaacaatgaagttaaaacgggcgtgcaaagtggtttgaaaagagtgggc
ctggcgatgctgtcactgtcaataccgatcattgatgacaaaaagaaaaaaacgacccgc
agttggatcgagagtacgtttcaaaagcgagagtgtaaatgcttcattcccagcccaaaa
gatgagcatatttgttggtgcggtctgagtaaaacagcccatggctcctcgatccccatc
ggccccgctggtgaatcctggctaccagcacgacacacgcagccttcgtcaaccgacgcc
tacggcactgttgagtttcaaggcggaccacatcctactaaagctcagtacgtccggctg
tcacatgatacaagacccgagctgatagttcagctgcttactcgagaatgggctctcgaa
agaccgaagctgttgattaccatccagggcgggaaggccaacttcgatctgcagcccaaa
ctcaaaaaggtcctgcggaaggggcttctcaaggctgcgaagacgactggtgcttggatc
ttcacgggaggaacgaatacgggtgtgacccgtcaagtaggcgacgccctgcagttggag
aggtcacagcgagctggtcgtgtcgtcagcatcggcattgcaccctggggtattgtagag
ggcgctaatgaactcatcgggagggggagggacgtgccctaccacgcaatagcctcccca
agatcaaagctggccgtgctcaacaacaggcatgcctacttcctgctggttgacaacgga
tccatcggcagatatggagcggagatcgtgctgcgacggaagctcgagaaatacatcgcg
gcgcagaagttacacccttacacgcattcgtcgactccggtggtatgcctggtgatagag
ggaggtacgaacaccgtgcgagccgtcctggagtacgtcacagattctccgccagttccg
gtggttgtttgtgacgggagcggcagagctgcggacctcattgctttcgtgcacaagtat
gcgtcagaaactggtgaacaatcagttctggaggcaatgcgggactacctcatcagtacc
atccagaagaccttcgaggttggcttacagcaagccgagtgcttatatggtgaactgctg
caatgtacgaaaaagaagaatttgataacagtattccgtattcaagaacgcgcagaaggt
ggggaagtacaggaactggaccaggtaatcctgacggcactgttccgagcacagcatctg
tcagccagcgagcaactctccctggctctcacttggaacagagtggatattgcgcgatct
gaaatatttgtctatggacaagagtggccgccaggagctctagatgaagcaatgatgcaa
gctctggaacatgaccgcatagacttcgtgaagctgctgttggagaacggggtctccatg
cggaagtttctgacgatacctcgacttgaagaactctacaacaccaagagtggtcccagc
aatacgatgcaatacatactgagagatgtaagaccgcatctgcccagaggctacatttac
acgctgcacgacataggcctggtcatcaataagctcatgggaggtgcttataggtgctac
tacactcgtcgcaagttccgtccaatttacgcgaaagttatgaacaagagtgtgaacgtc
catcgcaacagcgcttctttcactcgtcacaacaacgcgggtggactctcactgatcgcc
gggtttatgccagtaacaacagagatggcactatttgattaccccttcaacgaactgctg
atgtgggcagtgttaacaaagcgacaccagatggctttactgatgtggactcacggggag
gaggctctggctaagtcattggtggcctgcaagttgtacaaagccatggcacacgaagcg
gccgaggatgatatggagacagaggtttatgaggagctgcggcactacggcaaggagttt
gagactaaagcattggaactgttggactattgctatcgtcaagatgacgatcaggcccaa
cagcttcttacctgtgaactccagaactggtcgggacaaacttgcctgagtttggctgtc
gctgctaaccacagagctctcctagctcatccttgctcgcaaataattctggctgatttg
tggatgggaggtctacgtacacggaagaacaccaacctaaaggtcattctgagtctcctg
tgtccgctgtacatcctacaactggagttcaagtccaaggaggaactgcagctcatgccg
cagactgaagaagagcatctagagaacgagagccttgaagacgacaggagtaacaaggat
ccgaatgatgcagagcaggcgttgattggctcaggggaatgcgagaccagagtcgatcag
aatggcaaagttggtaaaataggatgggaggtgtcgtacagagaactgccggagtaccac
gcaccagaagataagcgaatgcgccctctgagactgcgaaagaagatttacgagttcttc
acggcgcctattaccaagttctgggctgattcgattgcctacatattattcctactgatg
tttacctatacagtattagtgaagatggacccgacaccatcttggccggagatatattcc
atatgttacattattacgttcctctgcgagaagatacgagaaattgttacgtctgagcct
gttgccattagacataagttcagcgtgtgggcttggaacatgtggaatacatacgatgct
ggtttcattatattcttcctggtcggtctgacgcttcggttccgcccagcatcaatggac
gtcggccgggttatttactgcgtggatattatttattggtacttaaggatattgaatata
ttgggtgtaaataagtacttaggtccactagtcacgatgatgggtaaaatggttaagaat
atgatttatttcgtggtgttactgcttgttgtactgatgtcatttggagtggcgaggcaa
gccatattgtacccagataaagaagctagttggtacctgataagagaaatcttctaccaa
ccctacttcatgttgtacggggaggtttttgcccccgacatcgaccctccgtgcggcaca
aacgtcggcgatcagaaatgtgtaacaggccgttggattactccaattgcgatgacagtc
taccttctcgtcgccaacatcttattgataaacctccttattgccggctttaataatatc
tttaacgaagtcaatgaagtctcgcatcaggtatggatgttccaaagattcacagtagtg
atggaatacgaacaaaaaccagtgctaccaccaccattaataatattttgccacatttac
gcaacatgcaagtggataacgaggaacgtctcacataagaggtttcaatacgacaatggc
ctgaaacttttcttagaaaaagaagacttggagagactttacgactttgaagaggaatgc
gtcgaaggctattttagggaacaagaagttaaattatcaaattcattagaggagagagtt
cggagcacgacggacagagtggagaatataacaacgaaaatggaagatttaaatcaaaaa
gctaacctccaaatacaatcagtacagaatgtagaatttaggttaaggaagctggaagac
gtggcggaacagaccatgaaatatttagctgtgatacaccggttcatggcaacacaccct
tcgttggtgaacagaggctctaccgacaccctgggtcctacacctccaaccttccaggct
gcagctgccaggttacggacagccagcgacagatccgaggtgctatcggacagcgaaact
ggcgtggctcggttcacagtgcgaccagtgcaggaagaagacgaggcgtcgcagccttcc
gacgatgaaatgccacaatcgggtcctgaagtggtggctgacaaggaacatgaaggagat
tctgaatcaacatcatcaggagataatgcggctgctccagatgtaactgttataaaacag
cctgtaatagtggctcccattcgccagcgatcatcagacagcaatagaacagagcccagc
gatgacaagaaagtgcaatcatcaacagacgatgcatttctacctgaagtgcgtgaaata
ccttcggatggaaacagcctgcgtccaagaactatatcagcaagtacaaggcgaacggct
aatgctcggaggcgatctgaaggtggaaatgacgtaggaatggggggacactattcagct
cagcacttggcaccaagacgacagcacagtcagacacattctgagccagacaactctgct
gtcgatgcaacatcactgcataattctgttacagggtgggaggcgactggcggagcaaca
gggatgccttcgacgaggtcacgtgtaggaggtgccccgagatccttactgctggctatg
cacgaatataccagcatcactgatgagctcgaaacggtttatggactgttctccccacct
cacacgccaaggacaccaatcgcaacacgtctactgtctcccgcgcgtgccgcgtctccc
tcccagcgtcgacgtcacgcgagcgaaatgtccaacccagagttcgcactctacatggaa
aaggaacatctgaggggagcagaagaggacgactatcttataatggagaacctcatacaa
agacgcctagaaatggagtctgtcctgggcagatacgaggaggaggagggagctgctgaa
ggagggcaaatgggtgaaatcagcatcagcgtctgcgtcaacaccagcgctgatgacaca
atgccgcagcaaggaccagcaaaccccacgacaacactgctcactgttagcgacagacgc
ttaccgcatcaaagacactccctccgtcgttcgtcggcaatagacagccgagagttgcca
tctccattacagccactactcggtgacgacacatgtggggaagttctgcttccggtgccc
aggcaaccctcaggtgatacgaacgcttcaagtgacctatctctttcgcacatggtaagt
gagaatctgccgcccaggccttcaatagtgctggactcctcgcaactgcctcgacagaga
tcggctgagcagccaccgacacctcaaccaccagcaccagctcgcccggagactatgtgc
tag
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integrated database retrieval system
