Leptidea sinapis (Wood White): 126972741
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Entry
126972741 CDS
T09272
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
lsin
Leptidea sinapis (Wood White)
Pathway
lsin04382
Cornified envelope formation
lsin04512
ECM-receptor interaction
lsin04518
Integrin signaling
lsin04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lsin00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
126972741
04518 Integrin signaling
126972741
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
126972741
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
126972741
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lsin04147
]
126972741
00536 Glycosaminoglycan binding proteins [BR:
lsin00536
]
126972741
Exosome [BR:
lsin04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
126972741
Glycosaminoglycan binding proteins [BR:
lsin00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
126972741
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
126972741
NCBI-ProteinID:
XP_050675707
LinkDB
All DBs
Position
27:complement(7008071..7029484)
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AA seq
1821 aa
AA seq
DB search
MSVHVLWLVVFAVIAPPSGVSTQQDGYNRGDIEDNSIYPSQWPSFSSQGYYQAPAENSYY
GLSGRPDLPVPSPTAPEPPPAQYPSYGQNFAVYDPLTRRRTTAFDRNCTAPGCCVPKCFA
EKGNRGFPGRQGPPGLQGLQGHEGSEGPQGAKGQKGQIGPQGPHGPKGDRGRTGAKGFTG
LAGPPGPQGEPGMYGIPGRDGCNGTDGPPGELGPKGNQGPRGVPGVKGEKGYKGEPAHVG
RYSKGQKGEPGADGMQGPQGPVGPTGAPGLPGPRGNTGPMGPSGIKGDKGSKGSKGQSIQ
GNKGDRGDRGDRGPSCPSSYLPAHGNKGAIKGVKGNMGAKGEKGEQGRIGEKGDTGIMGE
HGLPGQMGVKGEKGIRGNPGDIGPRGMFGPPGPMGPKGDTGENGLAGLPGRDGAKGEPGK
DGLPGLRGLKGVPGPPGGRTGSQGPPGPPGPRGYMGPSGPPGTDGQPGERGSQGPMGPTG
GQGEPGTPGSEGPPGHKGSKGEAGLDGLRGEMGPRGYDGPTGPPGPRGPSGQDGISIPGE
KGVGGQPGLPGEKGQKGERGYNGLRGVPGNSTLGTPGSPGEMGPPGEKGEKGTPGFNGYP
GNPGEKGDIGGRCNECWPGEAGQKGDRGFPGVPGERGERGPPGSDGLPGVRGSDGLNGLP
GSPGSPGDRGDEGPNGPPGDNGADAIVPSDLVRGPPGRKGDQGEKGAQGVKGDRGSDGQP
GPMGLNGMPGKKGELGRMGSPGIDGMPGADGVPGLPGAKGASIKGEKGEHGDFGQKGDKG
YSGRGGEKGEPGQCPNELKVLTKGEKGNQGPQGVQGPQGIPGDKGDRGLMGRTGDKGEKG
ITGLAGPVGPRGAPGYKGDKGELGAMGFPGTAGLIGPRGYPGQPGLKGDTGETGPSMPGP
PGPVGLKGLKGEPGLRGIVGTPGFDGPPGPAGLNGEKGDLGLTGQPGWPGPVGPKGEPGP
VGPPGVPGIRGTPGLNGPKGEQGYQGLPGKDGVIGLPGPKGNPGVPGNDGPKGLTGARGR
PGPRGLPGIDGSPGEKGDKGDLGSPGINGEPGLDGLPGPVGLPGLKGDMGWRGPPGLPGT
QGLPGDKGDQGYPGLSGPKGEPGLVADKGEKGNAGYPGSPGIDGLPGIDGEKGDKGDAGL
PGLSIPGLPGPKGDMGPIGPRGFTGLPGDKGDKGLAGLPGYKGDRGQIGAPGIPGQPGLD
GMQGPKGERGFTGLDGETGERGEIGLAGRDGEDGAKGERGPMGPIGMVGPRGYQGEKGDT
GLPGLSINQKGDTGDIGPPGLPGLPGQKGNQGRQGLQGIQGEKGNQGLRGSKGDMGRPGR
TGDKGEQGPTGPMGIPGLTIKGEKGLPGIPGKQGRQGPVGSKGEKGEQGLTGLPGPVGRQ
GLPGPTGKQGEKGDQGIEGLPGPPGYDGTPGQPGEPGRDGEKGDKGDRGATGFGLPGERG
PRGLTGRPGLNGQKGDKGDRGLDGINGVPGSIGPQGDKGDQGPAGDIGPVGFDGEKGNKG
DAAAIVYGRNGEPGPRGPPGSDGLPGPPGLPGANGLDGKPGEKGDQGFPGPRGYPGPIGP
PGLQGLQGDRGDIGRTGQPGERGPPGAPCVTTDYLTGILLVRHSQTEMIPQCEPGHVKLW
DGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLSTNSP
IPMMPVQNNEIARYISRCVVCEVPSNVIAVHSQSLDIPSCPVGWNSLWIGYSFVMHTGAG
GNGGGQALASPGSCLEDFRATPFIECNGEGGTCHHFANKLSFWLTTIDDNKQFAMPERET
LKSGRLLQKVSRCAVCIKNTT
NT seq
5466 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtccacgtactttggctggtagtgtttgcggtcatcgcgccgccctctggagtg
agcacgcaacaagatggatataatcgaggagacatagaggacaacagtatatatccgagt
cagtggccttcattttcttcgcaaggctactatcaagctccggctgagaacagctattac
ggtctctccggcaggcctgacctgccggttccatctccgactgccccagaacctcccccg
gcgcagtatcccagctacggacaaaactttgctgtttacgacccacttacaagacgaagg
acgacagcttttgaccgcaactgtaccgcgcccggatgctgtgtccccaaatgttttgcg
gaaaaaggaaacaggggcttccctggcagacagggaccgccgggcttgcaaggtctacaa
ggtcatgaaggcagtgaaggcccccaaggtgcaaaaggtcagaaaggacaaatcgggcct
caaggtccacatggaccaaaaggagacagaggtagaactggagcgaagggtttcactgga
ttggctggaccaccgggtcctcagggagaacctggaatgtacgggatccctggtcgtgac
ggatgcaacggcacagatggtccaccgggagagttggggccaaaaggaaatcaaggtcca
cgtggagtcccgggtgttaaaggagagaagggatataaaggagaaccagcgcacgtcggc
cgatatagtaaaggacaaaaaggtgaacctggagccgacgggatgcagggaccccaaggt
cctgttggaccaactggggcgcctggtctccctggcccgagaggcaatacaggaccaatg
ggaccaagtggaataaaaggagataagggatcaaaaggatctaaaggtcaatcgatacaa
ggaaataaaggtgataggggagatcgaggagacagaggacccagctgcccatcgtcatat
ttacctgctcatggtaacaagggagcaataaaaggagtaaaaggaaatatgggtgcaaaa
ggtgaaaagggtgaacaaggtagaataggtgagaaaggagataccggtataatgggtgag
catggactgcctggccaaatgggggttaagggagaaaaaggaatacgaggaaatcccgga
gatataggccctcgcggtatgtttggtccacctggacccatgggacctaaaggtgatact
ggtgaaaatgggttggccggccttcccggtagagatggtgctaaaggagaacccggtaaa
gatggtttaccaggcttaagaggcttaaaaggtgtacctggcccacctggaggtaggaca
ggctctcagggtccacctggtccaccaggacctagaggttatatgggaccatcaggaccc
ccaggaacagatggacagcctggcgaaagaggatcgcaagggcctatgggtcctactgga
ggacaaggtgaacctggaacgccaggcagtgaaggccctccaggacataaaggctctaaa
ggagaagcagggttggatggtttacggggtgagatgggtcctagaggctatgatggtcct
actggaccccctggccctcgtgggcccagtggtcaagatggcatttcaatccctggagaa
aagggtgtcggcggtcagccaggattgcccggagaaaaaggtcaaaaaggagaacgtggt
tataacggacttaggggtgtaccaggaaactcaactttaggtactcctggcagcccaggt
gaaatgggaccacctggagagaaaggagaaaagggaactccgggcttcaatggttaccct
gggaaccctggagaaaaaggagatattggaggacgttgtaatgaatgctggcctggcgaa
gcagggcagaagggcgatcgtggcttccctggtgttccaggtgaacgtggagaaagagga
ccgccaggatctgatggtttacctggagttagagggtcagatggattaaatggattacca
ggatcacctggttctccgggagaccgtggtgacgaaggaccaaatggaccacctggtgat
aatggtgcagatgctattgttccatccgatttagtcagaggaccaccgggtagaaaaggt
gatcaaggagaaaaaggtgctcaaggagtaaaaggagacagaggatccgatggccagcca
ggtcccatgggcttaaatggtatgcctggtaaaaaaggagaactaggccgaatgggttca
ccaggaatcgacggaatgcccggggcagatggagttcctggtcttcctggtgcaaaagga
gcatctatcaaaggagaaaagggagagcatggtgactttgggcaaaagggtgataagggt
tattctggaaggggaggagaaaagggtgaacctggacaatgtccaaatgaattaaaagtt
ctcacaaaaggagagaagggaaatcaaggaccccaaggtgtacaaggaccacagggaata
cctggtgataaaggtgatagaggtttaatgggaagaacaggagataagggtgaaaaggga
ataacgggcctcgcgggtccggttggaccacgaggtgctccagggtacaaaggagataag
ggtgaattgggtgccatgggcttcccaggtacagctggtttgattgggcccagaggatat
ccaggccaaccaggtcttaagggagatacaggagaaacaggaccgtcaatgccaggacca
cccgggccagttggattaaagggtctaaaaggtgaaccgggtctaagaggaattgtagga
acacctggatttgacggtcctccaggacctgctggtttgaatggtgaaaaaggtgatttg
ggcttaacaggtcaaccaggatggccaggtcctgtaggacctaaaggggagcctggtcct
gtgggtccacctggagttcccggtatacgtgggactccaggactaaatgggcctaaaggg
gagcaaggatatcaaggattgccgggcaaagacggagtaataggccttcctggacccaaa
ggaaatccaggggttccaggaaacgatggaccaaaaggcttgactggggctcgaggccga
ccaggtccacgtggattgcctggaatagacggcagtcctggtgaaaaaggagacaaagga
gatttgggatcaccaggtattaatggagaaccaggattagatggacttccggggccagtt
ggcttaccgggtcttaaaggagatatgggttggcgaggaccaccaggtttgccaggtaca
caaggcttaccaggagataaaggagaccaaggttatccaggtttaagtgggcctaagggt
gaaccaggactggtagcagataaaggagaaaagggtaacgctggatatccaggttcacct
ggaattgatggattaccaggaatagacggcgaaaaaggtgataagggggatgctgggcta
cctggacttagtataccaggactcccaggtcctaaaggtgatatgggaccaattggtccc
agaggttttactggcttgcctggagataaaggagataaagggttggcaggtctacctgga
tataaaggtgatagaggacaaattggtgcaccgggtatccctggccaaccaggattagat
ggcatgcaaggtccaaagggagaaaggggattcactgggttggacggtgagactggtgaa
aggggagaaatcggtttagcaggaagggatggagaagatggagctaaaggagaaagaggc
ccaatggggccaattggtatggtaggaccgagaggctatcagggcgaaaagggtgataca
gggttaccaggtttatctatcaatcaaaaaggagatactggtgatattggaccaccagga
ttgcctggacttcctggacaaaaaggaaaccagggcagacaaggcttgcaaggtattcaa
ggtgaaaaaggaaatcaaggattacggggctcaaagggtgacatgggtcgaccgggcaga
acaggtgacaaaggtgaacaagggccaacaggacccatgggtattccaggtcttacaata
aaaggtgaaaaaggcttgccaggaattcctggaaagcaaggacgtcaaggtccagttgga
tctaaaggtgaaaagggagaacaaggtttgacaggattaccaggtccagttggtcgtcaa
ggtctcccaggcccaacagggaaacaaggagaaaaaggagatcaagggattgaaggtctt
cctggtccaccaggttatgatggtacacctggtcagccaggagaacctggtagagacggt
gagaaaggtgataaaggagatcgtggtgccaccggctttggtttgccaggggaaagaggt
ccaaggggtttgacaggtcgtccagggcttaatggacaaaagggtgacaaaggagacaga
ggacttgacggaattaatggcgttccaggctctattggtccacaaggggataagggtgat
caaggccctgcaggtgatattggtccagtcggtttcgatggagaaaaaggaaataagggt
gacgctgcagcaatagtttatggccgtaatggagaaccaggacctagagggccaccagga
agcgacggactcccgggtcctccaggcttaccaggagctaacggtttggacggtaagccc
ggtgaaaagggagatcaaggttttcccggtcctagaggatatccaggacccattggccct
ccaggtttacaaggacttcaaggtgatagaggtgacattgggcgaactgggcaacctggt
gagcgcggtcctccaggggctccttgtgttacaacagattaccttacaggaattcttttg
gttagacacagtcaaacagaaatgattcctcagtgtgaaccaggtcacgttaagttatgg
gatggttattctttattatatattgatggaaacgaaaaagcacataatcaagacttagga
tatgccggctcctgtgtacgcaagtttagcacaatgccattcctcttctgcgaccttaac
gacgtttgcaattatgcaagtagaaatgacagaagttattggctatccaccaatagtcca
attcccatgatgcctgtgcagaacaatgagattgcgagatatatttcaaggtgcgtggtg
tgtgaagtgccctcaaatgtcatcgcagtacacagccagtcattagacataccgagctgc
cccgttgggtggaactcactatggatcggatacagttttgtcatgcatactggagctggg
ggtaatggtggagggcaagcgctagctagtcctggttcctgtcttgaagatttccgagca
acaccattcattgaatgtaatggagaagggggcacatgccatcactttgctaataagctt
agtttttggcttacgacgatcgacgacaacaaacagtttgcaatgcccgaacgagaaaca
ttaaaatctggtcgcttactacaaaaagtatcaaggtgtgcagtgtgcattaagaacaca
acttaa
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