Leptidea sinapis (Wood White): 126973231
Help
Entry
126973231 CDS
T09272
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
lsin
Leptidea sinapis (Wood White)
Pathway
lsin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126973231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsin03041
]
126973231
03009 Ribosome biogenesis [BR:
lsin03009
]
126973231
Enzymes [BR:
lsin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126973231
Spliceosome [BR:
lsin03041
]
Complex A
U2 snRNP components
U2 related factors
126973231
Complex B
126973231
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
126973231
Ribosome biogenesis [BR:
lsin03009
]
Eukaryotic type
90S particles
Helicases
126973231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
SRP54
nSTAND3
ABC_tran
Flavi_DEAD
T2SSE
AAA_25
Motif
Other DBs
NCBI-GeneID:
126973231
NCBI-ProteinID:
XP_050676376
EnsemblRapid:
ENSLSNG00005003386
LinkDB
All DBs
Position
29:1960715..1982897
Genome browser
AA seq
737 aa
AA seq
DB search
MSKRRIEVMDPFIKKKREEKAAAAAKSGGSGESSSDSAVATLGTALAPTSTSTPGINPYT
GLPHSTRYHELLRRRLGLPVWEYKNDFMRLLNTHQCVVLVGETGSGKTTQIPQWSVEFAA
VTAGKSKGVACTQPRRVAAMSVAQRVAEEMDVALGQQVGYSIRFEDCSGPQTVLKYMTDG
MLLREAMSDPMLEQYRVILLDEAHERTLATDILMGVLKEVIKQRPDLKLVIMSATLDAGK
FQQYFDNAPLMNVPGRTHPVEIFYTPQPERDYLEAAIRTVVQIHLCEEIAGDILLFLTGQ
EEIEDACKRIKREIDNLGPDAGELKCIPLYSTLPPNLQQRIFEPAPPNRANGAIGRKVVV
STNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTKPG
KCFRLYTEKAYKNEMQENTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRA
LELLNYLAALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQC
FVRPNEARKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDN
VRQQLSRIMDRFSLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTGHYLTVKDNQIV
QLHPSTCLDHKPDWVLYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYELNNFPQCEARRQ
LELLQARLESKSYQEGF
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagcgcaggatagaagtaatggatccctttatcaagaaaaaaagggaagagaaa
gcagcagccgcagctaaatctggtggcagtggagagtcatcatcagattcagcagtggct
acacttggcacagccttagcgccaacatctactagcacccccggcatcaacccctacaca
ggtctaccacattcaactcgctatcacgaattacttcggcggcgtctcggccttcccgtt
tgggaatacaaaaatgacttcatgagactcctcaacacccatcagtgtgttgtacttgtt
ggtgaaactggatcggggaagacaacgcagatccctcaatggtctgtggaatttgcagca
gtcactgctggcaagtccaaaggagttgcttgtacacagccgagaagagtagcagccatg
tcggtggctcaaagagttgctgaagaaatggatgtagctttagggcagcaagttggttac
agtattcgttttgaagattgctcaggaccgcagacagtgcttaaatacatgactgatggt
atgttgcttcgtgaagcaatgtctgacccaatgctcgaacagtacagagtgattttactt
gacgaggcccatgaaaggacactagctacagatatactgatgggtgttttaaaagaagtt
attaaacaaaggccagatttgaagctagttattatgtcagccactttggatgctggcaaa
tttcagcagtactttgacaatgcgccacttatgaatgtacctggtagaacccatcctgta
gagatcttctacactcctcaaccagaaagagactatttggaagcagcaattcgaacagta
gtgcaaattcacttatgtgaagagatagcaggagacatacttcttttcttaacgggccaa
gaggagatagaagatgcctgtaagcgaataaagcgtgaaatagataatttgggtcctgat
gctggagagttaaaatgcataccattatattctacattgccaccgaatttgcagcaaaga
attttcgagccagcccccccaaaccgtgccaatggtgccataggacgaaaggttgtagtg
tctacaaatatagcggaaacgtcattgactatagatggtgtagtgtttgtaattgatcct
ggttttgccaaacaaaaagtatacaatcctcggataagagtagaatctttgctggtatca
cctatcagtaaggcatctgctcagcaaagagcaggacgcgccggcagaaccaaacctggg
aaatgcttcaggctctacacagagaaagcatacaagaatgagatgcaggagaacacttat
ccggagattttgagatcaaacttaggatctgtagttttgcagttgaaaaagctgggcatt
gatgacttggtgcatttcgacttcatggacccgccggcgcccgagactctcatgcgggcc
ttggagcttctgaactatctggccgctctcgatgacgatggaaacctgacggacctgggc
gctgtgatggccgagttcccattggacccccagctcgccaagatgctgatagccagctgc
aaccacaactgctccaacgagatcctgtccattaccgccatgctttccgtgccacaatgc
ttcgtgcgaccgaacgaggcgcgcaaagccgcggacgaagccaagatgcggtttgcgcac
atcgacggagaccacctcacgctgctcaatgtctaccacgccttcaaacagaatatggaa
gatcctcactggtgttacgacaacttcataaactaccgttctctcaagtccggagacaat
gtcagacaacagctcagccggatcatggacaggttcagtctcaaacggacaagtacagag
tttacaagtaaggactactatattaacatcaggaaagctctcgtcaatggtttcttcatg
caggtagcacacttggagagaacgggccactacctcacggtgaaagacaaccagatagtg
cagctccatccgtccacatgtctggaccacaagccggactgggtgctgtacaatgagttc
gtgctcaccactaagaattacattcgtactgtgactgatatcaaacctgaatggttactg
aagatagcaccacagtactacgagctgaacaacttccctcagtgtgaggctcggagacaa
cttgagctgctgcaagccaggctagaatccaagtcataccaggaaggtttctaa
DBGET
integrated database retrieval system
