Leptidea sinapis (Wood White): 126974175
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Entry
126974175 CDS
T09272
Name
(RefSeq) ATP-dependent RNA helicase Ddx1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
lsin
Leptidea sinapis (Wood White)
Brite
KEGG Orthology (KO) [BR:
lsin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsin03041
]
126974175
03016 Transfer RNA biogenesis [BR:
lsin03016
]
126974175
Enzymes [BR:
lsin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126974175
Spliceosome [BR:
lsin03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
126974175
Transfer RNA biogenesis [BR:
lsin03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
126974175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
ERCC3_RAD25_C
PGK
Motif
Other DBs
NCBI-GeneID:
126974175
NCBI-ProteinID:
XP_050677569
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All DBs
Position
31:1613750..1632422
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AA seq
729 aa
AA seq
DB search
MTAFEEFGVLSELGKAIEEMEWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI
LQIVWETLKDIQEGKTSNVITQASSEWTMSFFDRTDALAVTPDGLRCQSRDHAAWHGCRA
TKGVHTKGAYYYEATVTDEGLCRVGWSTQAAKLDLGTDRLGFGFGGTGKKSNAKQFDDYG
SAFGMNDVIGCMLNLNNGEIRYTKNGEDLGVAFKLDQSRRSDCYFPAIVLKNAEMSFNFG
ATPFKYPPPKEYVAISQAPKEYVKLNVVSASAAAGASKPVNNAPQAIIIEPSRELAEQTC
SQITLFKKHLDNPKVRELLVVGGINVKDQINQLNSGVDIVVGTPGRLEDLIQGGYLALTH
CRFFVLDEADGLLKAGCGELIERLHRQIPKITSDGRRLQMVVCSATLHAFEVKKMAEKLM
HFPTWVDLKGEDAVPETVHHCVVNVDPQNDRSWQTLRKQIQTDGVHAKDNLRSGNTTPET
LSEAVKILKGEYCVRAIREHKMDRAIIFCRTKIDCDNLERFLKSFGNEFSCVCLHGDRKP
QERKANLEKFKQSQVKFLICTDVAARGIDISGLPFMINVTLPDEKSNYVHRIGRVGRAER
MGLAISLVATVPEKVWYHGEWCSSRGRNCNNTNLIDDRPKGCCMWYNEPQYLADIEDHLN
ITIQQIEPDMKVPSNEFDGKVVYGEKRKTVGSGYQDHVSQMVPVVKSLQELESQAQLYYL
KTHHNVTVA
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgtttgaagaatttggtgttctttctgaacttggtaaagctatagaagaaatg
gaatggacgctgcctacagatgttcaagcagaggctataccacttatcttaggtggagga
gatgttcttatggctgcggagaccggtagtggaaagaccggtgccttttgtttaccaatt
ttacaaattgtttgggaaactttaaaagatatacaagaaggaaagacaagtaatgtgata
acacaagcatcttcagagtggactatgtcgtttttcgatcgcacagatgcattggcagtg
actccagatggcttaaggtgtcaatctcgtgatcacgcagcttggcatggttgcagggcg
accaaaggtgtacataccaagggtgcatactactatgaggctaccgtaacagacgaaggc
ctttgccgtgtaggatggtcaacacaggcagcaaaattagatttaggtacagatagactt
ggttttggttttggtggaacaggaaaaaaatcaaatgctaaacagtttgatgactatgga
agtgcatttggaatgaatgatgtcataggttgcatgttaaatttaaataatggtgaaatt
cgttacactaaaaatggtgaagaccttggtgttgcattcaaattagaccagtctcgcagg
tcggactgttacttcccagcaattgtgttaaaaaatgctgaaatgagcttcaattttggt
gctaccccattcaaatatcccccaccaaaggagtatgtagcaatttcacaagcacccaag
gaatatgtaaagctcaatgtagtatcagcttcagccgctgccggtgcaagcaagcccgtt
aataatgcaccacaagcaatcattattgagccgtcacgggaattggcagaacaaacatgt
tcacaaataacattgttcaagaaacatttagataatcctaaagttagagagctgctggtc
gttggtggtatcaacgtgaaggatcagatcaatcagttgaattctggtgttgacattgtt
gtcgggacgcctgggaggctggaagacctcatacaaggaggatacttagcccttacacac
tgtcgtttcttcgtgctggatgaagccgacggtctcctaaaggcgggctgcggtgaactg
atagagaggctgcatcggcaaataccgaagattacctcggacggaagacgtttgcagatg
gtggtctgctcagcaacactacatgctttcgaagtcaagaaaatggcggaaaagctgatg
cacttcccgacgtgggtggacctgaagggtgaggacgcggttccggagactgtccaccat
tgtgttgttaatgtggatccgcagaacgatcgcagctggcagactctcagaaagcaaatt
cagaccgatggtgttcatgctaaggataatctaaggagtggtaacactactccggagacg
ctatcagaagctgttaagattctgaagggagagtattgtgttcgggctatcagagaacac
aaaatggacagggctataatattctgccgcaccaaaatagactgtgacaatctggagcga
ttcctaaagtcattcggcaacgagttttcctgcgtgtgccttcacggagaccgcaaacca
caagagaggaaggccaacttggagaagttcaagcagagccaagtcaagttcctcatctgt
accgatgtagcggcgcggggcatcgacatatctggactgccgtttatgatcaacgtgacg
ctaccggatgagaaatcgaattacgtgcaccggatcgggcgtgtgggtcgcgccgagcgt
atgggactggctatcagcctcgtagccactgtgccggagaaggtgtggtatcacggagaa
tggtgctcctctcgcggccgcaactgcaacaacaccaatcttatagacgacagacccaag
ggttgctgcatgtggtacaacgaaccacagtacttggccgacattgaagatcacttgaac
atcactattcaacaaatagagcccgatatgaaggtgccgagcaacgagtttgatggaaaa
gtcgtgtacggagagaagagaaagacggtcggctcgggataccaggaccacgttagtcaa
atggtgcctgttgtgaaatcgctgcaagaattggaatcgcaagcccagctttattacttg
aagacccaccataacgtcaccgtggcttag
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