Leptidea sinapis (Wood White): 126977447
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Entry
126977447 CDS
T09272
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lsin
Leptidea sinapis (Wood White)
Pathway
lsin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126977447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsin03019
]
126977447
03012 Translation factors [BR:
lsin03012
]
126977447
Enzymes [BR:
lsin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126977447
Messenger RNA biogenesis [BR:
lsin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
126977447
Translation factors [BR:
lsin03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
126977447
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
OB_NTP_bind
HA2_C
HA2_N
AAA_19
nSTAND3
Cas3-like_C_2
T2SSE
RsgA_GTPase
AAA_22
ABC_tran
AAA_11
Motif
Other DBs
NCBI-GeneID:
126977447
NCBI-ProteinID:
XP_050682198
LinkDB
All DBs
Position
45:3043680..3078298
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AA seq
1073 aa
AA seq
DB search
MLLIRAVFKMLSKMDNQKWKKKYSSRGGKSKWLGENGIKRPPGLRGREIGMYYKHQSETQ
PKEKFINLKIPQCVLNTVDENIIAIEKIAVKENISIPDLRMDFNSKSSQNNHPTIKIEGG
EDNAESSKVTRTSSNDLNNDASKSMTDDQSSKLSFNNINAYAIKEEIEKLEHNLNTVKPE
SVVELDDSDKDRFLDLREQNHFKYGYMDIITGSFEEKLKECINQRILVGNTGPDIVKMNA
TYQMEYDVMKHQKSYKSMLELREMLPTYKERERILNMIKTNQVIVLSGETGCGKSTQIPQ
IILDDALCNGKGANLKILVTQPRRIAASSLAMRVAKERAENVGKSVGYSVRLERVEPRQR
GSIIFCTTGVLLAELEVNQGLTSFSHIILDEVHERDTHVDLAMCMLKKILEVRKDLKLIL
MSATLDADVLSTYFDDCPVVKVEGLAYPVRDVYLEDILELTRYQLKEPFKKIKEPNPRKW
RGKGQDTEKESDKQYQTEIGPWLESIKKKIPTHVYNTLNDPRIEDIQIGLIVELLIYICK
GEPGAILVFLPGISEISKLIQQMEESNHFPSSLYQIYPLHSKLPTLEQHKIFERPPKNIR
KIIIGTNIAETSITIDDIVYVVDCGKIKMSGLNVKENIITLNNEWVSKANLHQRRGRAGR
CQPGVCFHLITSHRASLLADRLLPELQRSNLLEPVLTIKKLRLGLAAEAFQLVPSPPAAS
TVDWAISHLQKCGALDDRETLTPLGWHLARLPVHPAAGKLLLLGALFGCLDRAASVAAVW
SFKDPFQLVIGKEAEVKATKREFAMGEPSDHMALAEAVMQWEICSGRNRRSFAYDHFLSA
HTLHLLVDMKTQLGHNLKCMGFLPSGDVYSSWENRNWENLSLFKAIIAAALYPNIAAVKW
RIPRNPRKVPSITVTCPQDGKVVCHPSSVMAAQFSARPQTQKKLCDNPGANWLVYWLKQR
SSDLFLIDVTLVYTLPLLFFGEFAVKDDPKDSLNCLVSIGSINVRVRKDCAERLFKLRYL
LDQVLARKVMVGSTHAIKRSQFEEMVLKTVIRVITAEDEQVDYIEDDNMSFSD
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgcttttaataagagcagtgtttaagatgttatcaaaaatggataatcaaaaatggaag
aagaagtattcaagccgaggtggaaaatcgaaatggctaggcgaaaatgggattaaaaga
cctccagggttaagaggcagagaaattggaatgtactataaacatcaaagtgaaacacaa
ccgaaggaaaaatttattaaccttaaaataccacaatgtgttctgaacactgtggatgaa
aatataattgctattgaaaagatagctgtgaaagaaaatatttctataccagatttaaga
atggattttaattctaaaagctcacaaaataatcatcccactatcaagattgaaggtggt
gaagataatgctgaatcatctaaagtaacaaggacatcttcaaatgatctcaataatgac
gcaagtaagagtatgactgatgatcaaagcagcaaattgagttttaataatattaacgct
tatgctattaaagaggagattgaaaaacttgaacataatttaaataccgttaaaccagag
agtgtggttgagttagatgattccgataaagatagattccttgatttaagagaacagaac
catttcaaatatggctacatggatataataaccggtagctttgaagaaaagttaaaggaa
tgtatcaatcaaagaatattagtaggtaacacgggccctgatattgtaaagatgaatgcc
acgtatcaaatggaatatgatgttatgaaacatcaaaagtcatataaaagcatgttagag
cttcgggaaatgctgccaacctataaggagagggagcgaatattaaatatgatcaaaaca
aatcaagttattgttttaagtggtgagacaggttgtggaaaatcaacacagataccacag
attatattagacgatgctttatgtaatggcaaaggagctaatttaaaaatccttgtaact
caaccaagacgaattgctgcctcatcattagcaatgagggttgcaaaagagagggctgaa
aatgttggtaaatctgttggatatagtgtgagactagaacgtgtagagcccaggcaacgc
ggaagcattatcttttgtaccactggagtattactggctgagctagaagtaaaccaaggc
ctcacttcattcagccacattatattggacgaagtccatgaacgagatactcatgttgac
ttagcaatgtgtatgcttaaaaagattttagaagtacgcaaggacttaaagctcattctc
atgagtgccacactagatgcagatgttttatcaacgtatttcgatgattgcccagtggtt
aaagttgaagggctagcttaccctgtgagagatgtttatttggaagatatccttgaatta
acacgttatcagcttaaagaaccgtttaagaaaataaaagaaccgaatccgcggaaatgg
cgcggtaaggggcaggacacagagaaagaaagcgataagcaatatcaaactgaaattgga
ccatggcttgagtccattaagaaaaaaatccccacacacgtatacaatactctcaatgac
ccgaggatcgaagatattcaaataggattaatagttgaacttttaatttacatttgcaaa
ggagaaccgggggccattcttgtatttttaccaggcattagtgaaataagtaagcttata
cagcaaatggaagagagcaatcatttccctagcagtttatatcaaatatatccactccat
tcaaaattaccgacgttggagcaacataagatctttgaacgaccaccgaaaaatatcagg
aaaataataataggaacaaacattgcggagacttcaataacaattgatgacattgtttat
gttgttgattgtggaaagattaaaatgagtggtttaaatgttaaagagaacataattact
ttgaataatgaatgggtgtcaaaagctaatttacaccagagacgtggtcgcgccggacgc
tgtcaaccaggcgtgtgttttcatctgataacgtcacaccgagcgtctctcctcgcagat
agactcctgcctgaactacaacggagtaatctgctggagccagtgttgaccatcaagaaa
ctaagactcggactagctgccgaagcattccaactagtgccatcgcctcccgctgcctcg
accgtggattgggcaatctctcacttgcaaaagtgcggtgcactggatgaccgtgaaaca
ctgacccctctaggttggcacctggccagactgcccgttcacccagcggccgggaaactg
ttgttgctcggagccctattcggttgtctcgaccgggcggccagtgtcgcagctgtgtgg
agttttaaggacccgttccaacttgtcatcggtaaagaagcagaggtaaaagccacgaaa
cgcgagtttgctatgggcgagccaagcgaccacatggcattggccgaagctgtcatgcag
tgggagatttgttcgggcagaaacaggcgttcgttcgcttacgaccacttcctgtccgca
cacacactgcacctgctcgtcgacatgaagacacaactggggcacaatctgaaatgtatg
gggttcctgccaagtggtgatgtgtattcctcgtgggagaacagaaactgggagaatctg
agtcttttcaaggcgattattgcggcggccttgtatcctaatattgcggctgtgaagtgg
cgaattccaaggaaccccagaaaggttccatccataacggtgacttgcccacaagacggt
aaagtggtgtgtcaccccagtagtgtaatggccgcccagttttcggcaaggcctcaaact
cagaagaaactgtgtgataatccgggcgctaactggctcgtgtactggctgaagcagcga
tcttcagacctatttctgatagatgtaacacttgtgtacacgctgcctttgctgtttttc
ggcgagttcgccgtcaaggacgatccgaaggattccctgaactgcctcgtctcgatcggt
tcgattaatgtgcgcgttcggaaggattgcgccgaacgactgtttaaactacggtacctc
ttggaccaagtacttgcgcgaaaagtgatggtgggtagcacgcacgctatcaaacgcagc
caatttgaagaaatggtcctcaagactgttattcgagttataactgcagaagatgagcag
gttgactacatagaagatgataacatgagtttctcggattga
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