Leptidea sinapis (Wood White): 126977452
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Entry
126977452 CDS
T09272
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
lsin
Leptidea sinapis (Wood White)
Pathway
lsin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126977452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsin03041
]
126977452
Spliceosome [BR:
lsin03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
126977452
Complex C
U5 SnRNP specific factors
126977452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
TPR_16
TPR_17
HAT_Syf1_CNRKL1_C
FAT
TPR_CcmH_CycH
ARM_TT21_2nd
ANAPC3
ARM_TT21
TPR_21
TPR_12
Wzy_C_2
NatA_aux_su
Motif
Other DBs
NCBI-GeneID:
126977452
NCBI-ProteinID:
XP_050682206
LinkDB
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Position
45:complement(818132..835319)
Genome browser
AA seq
929 aa
AA seq
DB search
MSVPPQAFVNKNKKHFLGIPAPLGYVAGVGRGATGFTTRSDIGPARDANDVSDDRHAPPV
AKRKKTEDEDDDEDLNDSNYDEFSGYSGSLFSKDPYDKDDAEADAIYESIDKRMDEKRKE
YREKRLKEDLERYRQERPKIQQQFSDLKRELKTVSEDEWSAIPEVGDARNRKQRNPRAEK
FTPLPDSVLSRNLGGESSSSIDPGSGLASMMPGVATPGMLTPSGDLDLRKIGQARNTLMT
VKLSQVSDSVTGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPPAW
IASARLEEVTGKIQAARNLIMKGCEVNPSSEELWLEAARLQPADTARAVIAHAARNLPSS
VRVWVKAAELEQEPKAKRRVFRKALEHIPNSVRLWKAAVELENPEDARILLSRAVECCPT
SVELWLALARLETYENARKVLNKARENIPTDRQIWVTAAKLEEAHGNTHMVEKIIDRAIT
SLSANGVEINREHWFKEAMEAEKSGAVHTCQAIIRSVIGHGIDPEDQKHTWMEDADACAH
EGAYECARAVYGYALSVFPSKKSIWLRAAYLEKQHGTRASLEALLQRAVAHCPKSEVLWL
MGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENKEYDRARRLLAKARASA
PTPRVMIKSAKLEWALNNMEEALKLLDEAIKVFGDYAKLHMMKGEIEEQMGRDSDAHNTY
TQGLKKCATCVPMWILLSRLEEKLKHVTKARSVLEKARLRNPKNPELWLESVRLESRAGS
AEIAGAVMAKALQECPTAGRLWAEAIFMESRPQRKTKSVDALKKCEHDAHVLLAVSQLFW
TERKITKCRDWFNRTVKIDPDLGDAWAYYYKFELLHGNEQQQEEVKSRCKAAEPHHGERW
CQVSKQIANWCFNTEQVLLLVAKNLPVPT
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcccccacaagcatttgtaaataaaaataagaagcatttcctaggcattcct
gcacctctaggatatgttgctggtgttggccgaggtgctactggattcactactcgttct
gatattggtccagcaagagatgcaaatgatgtctctgatgatcgtcatgcaccacctgta
gctaaacgtaaaaaaacagaggatgaagatgatgatgaagatttgaatgactcaaactat
gatgaattctctggatatagtggatcattattttcaaaggatccatatgataaggatgat
gcagaagctgatgcaatttatgaatctattgacaaacgaatggatgagaaaaggaaagag
tatagagaaaaaagactcaaggaagatttagagagatatcgtcaagaaagacccaaaata
cagcaacagttttcagatttgaaaagagagttaaaaactgtttccgaagatgaatggtct
gcaattcctgaggttggtgatgctcgcaacagaaaacaacgtaatccaagggccgagaaa
tttacgcccctgcctgatagtgtgttgtcaagaaaccttggtggtgaatcttcatcatcc
atagatcctggctctggtttggcttccatgatgcctggagttgccacacctggaatgtta
actccttcgggtgaccttgatctccggaagattggccaagccagaaacactttgatgaca
gtaaaattatcacaagtatcagattcagtgacaggacaaacagttgttgatcctaaagga
tatttgacggacttacaatctatgataccgacatatggtggtgacattaatgatatcaaa
aaggcaagactactactgaagtcagtcagagagacaaatcctaatcatccccctgcttgg
atagctagcgctagattagaggaagtgacaggaaagatccaggcagcccgaaatctaata
atgaagggttgtgaagtcaaccccagcagtgaggaattgtggctagaagcggcaaggtta
cagcctgcagacactgccagggcagttatagcacatgcagcaaggaatctacccagcagt
gtgagggtatgggtgaaggctgccgaattagagcaggaacccaaggccaaacgacgagtg
ttccgtaaagctctagaacacattccgaattccgttcgtctgtggaaagcagctgtcgag
ttagaaaacccagaagacgcgcggatattactgtccagagccgtggagtgttgtccgacc
agcgtcgagctttggttagcattggctcgcttggagacatatgagaatgcgagaaaagta
ctcaataaggcacgtgaaaacattcctacagacaggcagatttgggtcacggctgccaaa
ttagaagaagctcatggcaacactcatatggtggagaaaataatagaccgtgctatcaca
tcgcttagtgccaacggtgtcgaaattaacagagaacattggtttaaagaggccatggag
gcagagaagtcaggtgcggtgcatacttgtcaggcgataattcgttcggtgatcggacac
ggtattgaccctgaggatcaaaaacatacttggatggaagacgctgacgcgtgcgcccac
gaaggagcctatgaatgtgcgcgggctgtttacggatatgctctatccgtgtttccgtca
aagaagtccatctggttaagggcggcctacttagagaaacaacacggaactagagccagc
ctggaagcgcttctgcagagagccgtcgcccattgtccgaaatctgaagtgctgtggctt
atgggggccaagtctaagtggcttgcaggtgacgtgccggccgctcggggtatattgtct
ctggcgttccaggccaaccccaactcagaggagatctggttggcagctgtcaagttggag
agcgagaacaaggagtacgaccgagcgaggcggctgctcgctaaggccagggcctccgcg
ccgacaccgagggtgatgataaaatcagcgaagttggaatgggcattaaacaatatggag
gaagcgttgaaactgctggatgaagctatcaaagtgtttggagactacgcgaagctgcac
atgatgaaaggggaaatagaggagcagatgggacgagacagtgatgctcataatacgtac
acgcaggggctcaagaaatgcgcaacttgcgtgccaatgtggatcctactatcaagactg
gaagagaaactgaagcacgtgacgaaagcgaggtcagtgctcgagaaggcgaggttaagg
aacccgaagaatccagaattgtggttagagagtgttcgactcgagagtcgcgcaggtagc
gcggagatcgcaggcgcggtgatggctaaggctctacaggaatgtccgaccgcgggcagg
ctgtgggccgaggcgatattcatggagtcccgaccgcaaaggaagaccaaaagcgtggac
gcgctcaagaagtgcgagcacgacgcccacgtgctgctggcggtgtcgcagctgttctgg
acggagaggaagatcaccaagtgtcgtgactggttcaacaggacggtaaagatagacccg
gacctcggagacgcgtgggcgtactactacaagtttgagttgctgcacggcaacgagcag
caacaagaagaagtcaagtcgcgctgcaaggctgccgagccccaccacggggagcgctgg
tgccaggtctccaagcagatagccaactggtgcttcaacacggagcaggtgctgttgttg
gtggccaagaacttacctgtacccacatag
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