KEGG   Leptidea sinapis (Wood White): 126978664
Entry
126978664         CDS       T09272                                 
Name
(RefSeq) WD repeat-containing protein 48 homolog
  KO
K15361  WD repeat-containing protein 48
Organism
lsin  Leptidea sinapis (Wood White)
Pathway
lsin03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:lsin00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    126978664
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lsin03400]
    126978664
DNA repair and recombination proteins [BR:lsin03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     126978664
SSDB
Motif
Pfam: WD40 WD40_Prp19 DUF3337 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_EML_2 EIF3I Beta-prop_WDR75_1st Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_IFT122_1st Beta-prop_SCAP NBCH_WD40 Beta-prop_TEP1_C WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_EIPR1 ANAPC4_WD40 Beta-prop_DCAF12 Beta-prop_RIG_2nd WDR54 Beta-prop_SPT8 Beta-prop_Vps41 Beta-prop_NUP159_NUP214 WD_LRWD1 Beta-prop_IFT140_1st Nucleoporin_N Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_Nup120_160 Ge1_WD40 RAWUL
Other DBs
NCBI-GeneID: 126978664
NCBI-ProteinID: XP_050683618
LinkDB
Position
3:16785957..16795388
AA seq 648 aa
MDSMMRKKTQVSFVIRDEEEKKHKNGVSSLQLDPVQGRLYSAGRDGIIRVWQTTGSSQDR
YIQSMEHHTDWVNDIVLCCGGKNLISASSDTTVKVWNAPKGFCMSTLRTHKDYVRTLAYA
KDKEQVASAGLDRAIFLWDVNTLTALTASNNTVTTSSLVGNKESIYSLAMNPPGTILVSG
STEKVLRVWDPRNCSRLMKLKGHADNVKALVVSRDGTQCVSGSSDGTIKLWSLSQQRCVS
TIRVHSEAVWALLATENFTHIISGGRDRLVIITELRNPVNFLIVCEETAPILKLCFTADQ
QAVWVSTSDSDIKCWKLPPMTSLNSETFNQNSYNTNNVYQTQPLHHIPGGKAIKNYTVLN
DKRHIITKDSSNNVVLYDVLKACKLDDLGEVDYDEEVKKQFKMVYVPNWFNVDLKTGMLT
IHLGQDETDCFSAWVSAKDAGLTTENDQKVNFGALLLQALLEHWNHPNRINEGGQKVFGN
NYFSVPVHTPLIFSEVGGRTLYRLQVGDAGGETEGNILMETVPSWVVDVAIEMAAPKLNK
LPFYLLPHSSCQSKQDRQKKDRLVANDFIQCRKVAEHVVEKIIGGGDVNGTGVTKTTPED
SVTEAPEEKVELLCCDQVLDPNMDLRTVRHFIWKSNVEFTLHYRIIKQ
NT seq 1947 nt   +upstreamnt  +downstreamnt
atggactcgatgatgcgtaaaaaaactcaagtttcgtttgttattcgggacgaagaggag
aagaaacacaaaaacggtgttagctcattacagttggatccggttcaaggaaggctttat
tcggccggtagagatggaatcatcagagtttggcagaccactggcagttcgcaggataga
tacattcaaagtatggaacaccatactgactgggttaacgacatagtgctctgctgcggt
ggtaaaaatctaattagtgcatcatccgatacgacagtaaaagtatggaacgcaccaaaa
ggattttgcatgtctactttgagaacacataaagattatgtacggaccttagcatatgcg
aaagataaggaacaagtagccagtgcaggtcttgatagggcgattttcttgtgggatgtt
aatactctaactgcgttaactgccagtaataatacagtcactacatctagtttagttggt
aataaagaatcaatttatagcctggctatgaatccgcccggtacaatacttgtaagtggt
tcaacagaaaaagtgctgagggtttgggatccaaggaattgttcacgtttaatgaaactt
aagggacatgcggataatgtaaaagcattagtagtaagtagagatggtactcaatgtgtg
tctggaagttcagacggcacaatcaaactatggtcattgtcacaacaaaggtgtgtctcc
acaatccgtgtgcactctgaagctgtatgggcgttattagcgactgaaaattttacccat
attatatcaggtggaagggacagattagtcattataacagaattaagaaacccagtaaac
tttctgattgtttgtgaagagacagcgccaatacttaaactctgttttactgctgatcag
caggctgtgtgggtatcaacatcagactctgacatcaaatgctggaaacttccaccgatg
acgtcattaaactctgaaacgttcaatcaaaatagttataacacaaataatgtatatcaa
acacagcctctgcaccacatacctgggggcaaagcaattaaaaactacacagtattaaac
gataaaagacacataattactaaggacagtagcaataatgtagtcctttatgatgtatta
aaggcttgtaaactagatgacttaggggaggttgattatgatgaggaggtgaagaaacaa
tttaaaatggtatatgttccaaattggtttaatgtagacttgaaaacaggtatgttgaca
atacatcttggccaagatgagactgattgttttagcgcttgggtaagtgcaaaggatgcg
ggactaactactgaaaatgaccaaaaagtgaactttggtgcactattgttgcaagctctt
ttagaacattggaatcatccaaacagaataaatgaaggtggccagaaagtgtttggtaat
aattacttttctgtgccagttcacactccgctgatattcagtgaagttggaggacggaca
ctttataggcttcaggttggtgatgccggaggtgaaactgaaggtaacatcttaatggag
actgtgccctcctgggtggttgatgtggcaatagaaatggctgcgcccaagctcaacaaa
ctgcccttctacctactcccgcattccagttgtcagagtaaacaggatagacaaaagaag
gatcgtttggtagctaatgatttcatccagtgtcgcaaagtggccgaacacgttgtggaa
aagataattggtggaggtgatgtcaatggtactggtgtcaccaagacaactcccgaagat
agtgtcactgaagcccccgaggagaaggtggaactattgtgctgtgatcaggttctagac
cccaacatggatctccggacagtcagacatttcatatggaaatctaatgtcgagttcaca
ttacactatcgtattataaaacagtga

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