Leptidea sinapis (Wood White): 126979134
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Entry
126979134 CDS
T09272
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
lsin
Leptidea sinapis (Wood White)
Pathway
lsin04140
Autophagy - animal
lsin04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lsin00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
126979134
04148 Efferocytosis
126979134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsin04131
]
126979134
Membrane trafficking [BR:
lsin04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
126979134
Hops complex
126979134
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
zf-C3H2C3
zf-RING_16
zf-RING_11
zf-RING_5
zf-C3HC4_2
Beta-prop_Nup120_160
DUF4562
zf-RING_2
zf-RING_UBOX
Clathrin
Beta-prop_RSE1_2nd
zf-RING_Vps41
Motif
Other DBs
NCBI-GeneID:
126979134
NCBI-ProteinID:
XP_050684319
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All DBs
Position
Z:complement(35126819..35140522)
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AA seq
988 aa
AA seq
DB search
MTSIFDQKENASQISRSAVPVSEQMTSSGYINMQLEDNTPMFSKQRMNFNPSDLITHVAV
SSDYLVLAMANGRLFRLDLKMPDQHEEIQFSKHVQPSSKLTSLFLDPLGHHLLLAFSARS
KDGNPELVYLHRKSTKLKSVSKSRNFEVTEVGWNYENKSLTSSGPILLGTSQGHILETEL
DAESDRMFAASQQYWRQLPSYLPLYGGKDIDGLIFDIGKGTDTPITGIQFHRVNKTSKYF
VFVTTPTRLYQFIGNAMFTDDKPSLQSIFHSYLTTPETGFQEIPSTLKYSKLQFYCDKSN
SPKTFAWLTEPGIFYGQLDPASQQNSNSLFTQSELINYPPNKDNSNETTPLAFVLTEFHA
LLMYTDRVKAICLLNHDLVYEERFSEVHGKLKNIVKDPLRRSIWAVTDKAVLRYKVVREE
RNVWRIYCDMGLFDLAKLYCQNNPAYVDIVNVKQADLLFSKGDYEKSAEVFADTQRSFET
VCLMFLEVDRIDALKIYLLRRLDALNDDDKTLISMIVIWMTELFLSQLGSLRRTGKDDSQ
EYHELQSDFEVFLLQPKVVQCMQHVKSVVYDLMSSHGDKQNLIKLTNINEDYENVVAQHI
YRKSYNDALEMLQSLKKPDLFYQFAPVLMEETPKNTINALISQGAKLSPTRLLPAFLSCQ
NDDAHSAEITRYLEFMLHNFNVKDKAIHNYLLTLYVEHDTDALMRYLVRQGQDIAMVNYD
VHYALRLCREKSLSKACVNLSALLGLWEAALELALEVDPALAKTVAAMPEDQALQKRLWL
AVAENIINKNQDIKEAMGLLRECALINIEDILPFFSDVTTIDHFSEPICQTLEEYNNQLE
ELQAEMDDATESAEYVRKEIQSFRERCVLVSVTDTCNLCELALLLRPFYLFPCSHCFHSD
CLLQEILPLLASGRRNKVAELQRQLGVLPSSELNAVTASGLSLREVITNELDDIAAAECL
YCGEHMIASIDQPFIAEADWEKLVKEWE
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgacttcgatttttgaccagaaagagaatgcctctcaaatatcccgaagcgcagtgcca
gtgtccgagcaaatgacctcttctggttatattaatatgcagctagaagataatacacca
atgttttcaaagcagcgtatgaacttcaatccttctgacctgataacacatgtcgctgtt
tccagtgattacttagttttggcgatggcgaatggacgactctttcggttagatttaaaa
atgccagatcagcatgaagaaatacagttctcaaaacatgtacaacccagttctaagctc
acatctctatttcttgatccacttggacaccatttgctactagctttttctgcaagaagc
aaagatggtaacccagagttggtttacctacatcgcaagagtaccaaacttaaatctgtg
agcaaatcaagaaactttgaagtgacagaagttggttggaactatgagaataaatcactc
acttcttcgggccctatccttttgggcacttctcaaggacatatcttggaaactgagttg
gatgcagaaagtgatagaatgtttgcagcaagtcagcaatattggagacagctgccaagt
tatttaccactgtatggagggaaggatattgatggattgatctttgacattgggaaaggc
acagacaccccaataactggaatacaatttcatcgagtgaacaagaccagtaaatacttt
gtatttgtgacaacaccaacaaggctgtaccagttcataggcaatgctatgttcactgat
gacaaaccctcgctccaatcaatatttcattcttatctcacaacaccggagaccggattt
caggaaataccttccacattgaaatattccaagttacaattctactgtgataaaagcaat
tctccaaagacatttgcatggttgactgagcctggtattttttatggtcagctggaccca
gcatctcaacaaaactcaaactcgctattcacacaaagtgaactgataaactatccacca
aacaaagacaacagcaatgagaccacacctttagcattcgtgttaacagagttccacgca
ctgctcatgtatacagatagagtcaaagctatatgccttctgaaccatgaccttgtatat
gaagaacgcttctcagaagttcacgggaaactaaagaacattgtcaaagacccgctaaga
cgcagcatatgggcagtcaccgacaaagcagttctaagatacaaagttgtcagagaagag
agaaatgtttggcgaatatattgtgatatggggctgttcgatctcgcaaaattgtactgc
caaaacaacccggcctatgtcgacattgttaacgtcaaacaggcggatctgctgttctca
aagggagattacgagaaaagtgcggaagtgttcgccgacacccagagaagtttcgaaact
gtttgcctaatgtttctggaagtagatcgtattgatgcgcttaaaatatacctccttaga
agacttgacgctctaaatgatgatgataagacgttgatatctatgatagttatctggatg
accgagctgtttttatcccaactcggctctttacgcaggacgggcaaagatgattcccaa
gaataccacgagttgcaaagtgactttgaagtatttttactgcagccaaaggtagttcaa
tgtatgcagcacgtaaaatctgttgtttatgacctcatgtcttcgcacggggataagcaa
aatctaataaaactgactaatatcaatgaggattacgaaaacgttgtcgcacagcatatt
tataggaagtcctataatgatgcactggaaatgctacagtcattgaagaagcctgatttg
ttttatcagtttgcgccagttctgatggaagagacaccaaaaaacacgatcaatgcattg
ataagtcaaggagctaagctgagccccactagacttctaccagcgtttctgtcttgccag
aatgatgatgcgcattcggcagaaataactcggtaccttgagtttatgctgcataatttc
aacgtgaaggacaaggctatacataattacttgctgacactatacgtggaacacgatacc
gacgcgctgatgagatacttggtcaggcaaggacaggatatcgccatggtcaactatgat
gtgcattacgctttgaggttgtgccgcgagaagagtttgtccaaggcgtgtgtgaacctg
tccgcgctcctgggcctgtgggaggcggcgctagagctggcgctggaggtagacccggcg
ctggccaagaccgtggcggccatgcctgaggaccaggcgcttcagaagcgactgtggcta
gctgtcgctgagaacataataaacaagaaccaagacataaaggaagccatgggtctgctc
cgggagtgcgcgctgatcaatatcgaggacatcctgcccttcttcagtgacgtcaccacc
attgaccacttcagcgaacccatctgccaaacgctagaggaatataataatcaattagag
gagttacaagcagagatggacgacgctacggagtcagctgaatatgtccgcaaagagatt
caatcgttccgcgagcgctgtgtgctggtgtcggtgacggacacctgtaacttgtgtgag
ctggctctgctgctgaggccgttctaccttttcccctgcagccactgcttccactccgac
tgcctgctgcaggagatactgccgctactagcgagcggccgccgcaacaaggtggccgag
ctccagcgtcagttgggcgtgttgcccagcagcgagctgaacgcggtgacggcgagcggc
ctgtcgctccgggaggtgatcaccaacgaactggacgacatcgcagccgccgagtgtctg
tactgcggggagcacatgatagccagcatcgatcagcctttcatcgcggaggccgactgg
gagaaactcgtaaaggagtgggagtga
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