Leptidea sinapis (Wood White): 126979345
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Entry
126979345 CDS
T09272
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
lsin
Leptidea sinapis (Wood White)
Brite
KEGG Orthology (KO) [BR:
lsin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsin03021
]
126979345
03036 Chromosome and associated proteins [BR:
lsin03036
]
126979345
Transcription machinery [BR:
lsin03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
126979345
Chromosome and associated proteins [BR:
lsin03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
126979345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
HTH_44
SPT6_acidic
S1
HHH_3
SH2
Spt6_S1
HHH_9
S1_RRP5
Tex_N
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
126979345
NCBI-ProteinID:
XP_050684543
LinkDB
All DBs
Position
3:7947548..7988127
Genome browser
AA seq
1753 aa
AA seq
DB search
MADFLESEAEESEVDSEEDEQPASKKPKRKAAVQSDDEDDEEEDDEERLREELKDLIDDA
PIEESGSDGEDSDASAGPKKRKKSDDELDDRLEDEDYDLIEENLGVKVARNKFKRLRRLE
DDDSDNEGVDDPDLEREVIAEKLFVGGSDEEDENRSESAAPREAEYDDENEDLESDADDF
IVDDDGRPIAERKKKRKPIFTDASLQEGQDIFGVDFDYDEFEKYGEEDYEDEEEEDLDEY
IEDEEEDGDRRRTKKGKAKRPSKKSIFEIYEPSELKRSHFTDLDNEIRKTDIPERMQIRE
VPITPVEEGSSELEDEAEWIYKQAFLKPPVSKADAQEARERSRRTGSTVIKIRQALDFMR
NQTLEVPFIAFYRKEYVQPELSINDLWKVYKYDAKWCQLKQRKENLIKLFENMREYQLDK
VMENPDAPIPDTMRLIKDEDIDRLKSVQTSEELRDVHTHFLLYYSHDLPEMQKLQRVKER
KKEIEEKKRQAREEAERNGEDPEEAAAAVQASLPDEEEPTEVKYAVRSGPYELCRKAGLE
PLVRKFGLTAEQFAENVRDNYQRHEVEQAPVPPLEAAQEYTARSAGCSAAEAVRRAVYMC
GVQLAREPLLRSTLRDALRERATVSVWPTPRGLKEIDESHACFSMKYLKKKPVRDLTGDQ
FLKLSIAAEDKLLELSISENIEGNTGPSYLEELKQLYQKDEFAATVQAWNDLRAEAVTLA
LTKIVMPELRRELQALLLQESKEYVLKCCRRRLYDWLKVAPYESRVSDDDDEEWDASNGI
RVVSIAYVPDRAHCAFACAVVGGGEVTDHLRLPHLLYRRNAFDALERENKEADLTALRRF
ILRKKPHVIVIGGESREALNIKADVSECVQQLIEDEQFPRIPIEIADNHISKIYSNSIRG
RNDFREYPDILRQAICQARLIQDPLMEISQLCGPDEEILCLRYHPLQDQITKEDLLEGIE
LEFVNRVNEVGVDVNEAVLTGRGTELLQFVCGLGPRKAQALLKLFKQTNQKLENRTQLVT
VCHMGPKVFINCSGFIKIDTSSLGDSTEAYIEVLDGSRVHPETYEWARKMAVDALEYEDE
DANPAGALEEILEAPERLKDLDLDAFAEELERQGFGNKSITLYDIRAELNSRYKDLRVSY
RSPTHEEMFDILTKESPDSFFVGKMVLATVVGISHRKPQREMLDQANPVRNDETGLWECP
FCRKNDFPELSEVWNHFDAGACPGQATGVRVRLDNGLSGYIHIKNLSDRHVTDPTERVRI
GQTIHCRVLKIDVERFSVDCSSKSSDLLDKNNEWRPPKDPYYDQESEDKDIRKDKVAKQT
KERAQYVKRVIVHPSFHNISFAEAEKLMESMAQGEVIIRPSSKGSDHLTVTWKVAEGICQ
HIDVREEGKENAFSLGRSLWIQGSEFEDLDEIIARYVTPMAGHARDLIAYKYYKPLGGMR
DKAEEWLKEEKAKNANKIHYIISAAKNHPGRFLLSYLPRNKVTHEYVSVTPDGYKFRQRM
FDSLGGLLKWFKEHFRDPPPSGTPVQRTPALRTPHGGMTSTMYHTPAPHTPAFHTPAHTP
GPAYINTPYTPSAQTPYMTPFATTPRQPDFLTPVVPRHKQVPVYTEPSDWQKAAEDWVRH
RTVRDTPATPRSSEGMSTPRQSNRTPRHDMRSTPRHDRTPRHDDRTPRHDDRTPRYDDRT
PRHDDRTPRHDDRTPRHDDRTPRHDSRTPRHDSRTPRHDGRGSRSHSVRSTPHTNTSPRS
MSLGDATPLYDEN
NT seq
5262 nt
NT seq
+upstream
nt +downstream
nt
atggcagacttcttggaatcagaagcagaagagagtgaggttgattctgaagaagacgaa
cagccagcaagtaaaaaacccaagcgaaaagctgctgtgcaaagtgatgacgaagacgat
gaagaagaagatgatgaagaacgtctacgggaagaattaaaggacctcattgatgatgct
cctatagaggagtcaggtagtgatggtgaagattcagatgctagtgcaggaccaaagaag
agaaaaaaaagcgatgatgaattagatgaccgacttgaggatgaagattatgatttaatt
gaagaaaatttgggtgttaaagtagcgaggaacaaattcaaacgtctgcgtcggttggag
gatgatgatagtgacaacgagggtgtggatgacccggacttagagagagaggtcattgca
gagaaattatttgttggcggttctgatgaggaggacgaaaaccgatctgaatctgcagct
cctcgtgaagctgaatatgatgatgagaatgaggatctggagtccgacgctgatgacttt
attgtcgatgatgatggtagacctattgctgaacgtaagaagaagcgaaagcctatattt
actgacgcgtcacttcaagaaggtcaagatatatttggtgttgattttgactatgatgag
ttcgagaaatacggtgaagaagattacgaggatgaagaggaagaggaccttgatgaatat
attgaagatgaagaggaagatggtgacagaaggcgcactaaaaaaggcaaagctaagaga
ccgagcaagaaatctatattcgagatatatgagcccagtgagctgaaacgaagtcacttc
acagatcttgataatgagatacgtaaaactgatataccagagagaatgcaaatcagagaa
gtgccaataacaccagttgaagaaggcagctccgagctggaggatgaagcggaatggatt
tacaaacaggcattcctgaaacctcccgtctccaaggcagatgcacaagaggccagggag
agatcgagaagaactggaagcacagtaataaagattagacaggcgttagacttcatgcgg
aaccagaccctggaggtgccattcatagcgttctacaggaaggaatacgtgcagcccgag
ctgagcatcaacgacctgtggaaagtctacaaatatgacgctaagtggtgccaactgaag
cagcgcaaagagaatctgataaagctgtttgagaatatgcgcgagtaccaacttgacaag
gttatggagaatcctgatgctcccataccggacaccatgaggctcatcaaggatgaagat
atcgatagattaaagagtgttcagacatcggaggaactgagggatgtccatacacacttc
ttgctgtactactcacacgacttaccagaaatgcagaagttgcagcgcgtcaaagagagg
aaaaaggagatagaagagaagaagaggcaagctcgtgaagaggcggagaggaacggagag
gatcctgaggaagcggcggccgccgtgcaggctagtctacctgatgaagaggagccgact
gaagtcaaatatgccgtcagatctggaccctatgagctgtgtaggaaggctggtctagag
ccactggtgcgaaagttcggtctgacggcggaacagtttgcggagaacgtccgtgataac
taccagcggcatgaggtcgaacaggctcccgtaccgccactggaagctgcgcaggaatat
acggcgcgttcggcggggtgctctgcggcggaggcggtgcggcgcgccgtgtacatgtgc
ggcgtgcagctggcccgcgaaccgctgctgcggtccacgctgcgggacgcgctgcgggag
cgagccacggtgagcgtgtggcccacgccgcgcggcctcaaggagatcgacgagagccac
gcctgcttcagcatgaaatatttaaagaagaaaccggtgcgagatctaactggtgaccag
ttcctgaagctgagcatagcagccgaggacaagctgctcgagctcagcatcagtgagaac
atagagggcaacaccggtcctagctatcttgaggagctgaagcaactctatcagaaggat
gagtttgccgcgaccgtgcaggcgtggaacgatctccgcgcggaggccgtcaccctggcg
ctcactaagatcgtgatgccggagctgcggcgcgagctacaagcgctgctgctgcaggag
tccaaggagtacgtgcttaaatgctgtcgccgtcggctatacgactggctgaaagtggcg
ccgtatgagtcgcgcgtgtctgatgatgacgatgaagagtgggatgcttctaatggtatc
cgcgtggtgtccatcgcgtacgtgcccgaccgcgcacactgcgcgttcgcgtgcgccgtg
gtgggcggcggcgaggtgacggaccacctccgtctgccgcacctcttataccgccggaac
gcgttcgacgcgctggagcgggagaacaaggaggccgacctcaccgcactcaggaggttt
attctccgtaagaagccccacgtgatcgtaataggtggtgagtcccgcgaggctctcaat
ataaaggcggacgtgtccgaatgcgtgcagcagctcatagaagacgagcagttccccagg
ataccgatagagatagctgacaatcacatcagcaagatctacagcaacagtattcgggga
cggaatgacttcagagaataccccgacatactccgacaagcgatatgccaagcgcgactc
atccaagaccctctcatggaaatatcacaactgtgcggccctgatgaagagattctatgt
ctgcggtatcatccgctacaggaccagatcaccaaagaggacttactagagggtatagaa
ctagagttcgtcaatagagtcaatgaagttggtgttgatgtgaatgaagctgttctaacc
ggtcgggggacggagctgttgcagtttgtgtgtggtctaggacccaggaaggcccaagct
ttactcaaactcttcaaacaaactaaccagaagttagaaaaccgaacacagttagtcaca
gtgtgtcacatggggcccaaagtgttcataaactgttctggattcatcaagatagataca
agcagtttgggcgatagtacggaagcatatatagaagtcctggatggttcaagggtgcac
ccggagacttatgaatgggcaaggaaaatggctgttgatgcactggagtacgaggatgaa
gacgcaaacccagctggtgctctagaggagattctcgaagcccctgaaagattgaaagac
ttagatttggacgcgttcgctgaagaattggaacggcaaggctttggaaataagagcata
acgctgtatgatattcgtgccgaactgaactccaggtataaagatctcagagtatcgtac
cgctcgcccacacatgaggagatgtttgatattctgaccaaagagtcgccggactccttt
ttcgtaggcaagatggtgctcgcaacagtggtgggaatctctcacaggaaaccgcagagg
gaaatgttggatcaggcgaatccggtgcgaaatgatgagactggtttgtgggagtgtccc
ttctgtaggaagaatgacttcccggaactgtcagaggtgtggaaccacttcgacgccggc
gcatgtccgggccaggcgaccggagtccgggtccggttggacaacggtctgtccggatac
atccacatcaagaacctgtcggaccgccacgtgacggacccgacggagcgagtccggatc
gggcagacaatacactgccgcgtgctcaagatcgacgtggagcggttctcggtcgattgt
tcgtctaaatcgtcggacctgttggataagaataatgagtggcgacctccaaaagatccg
tactacgatcaagagtctgaagacaaggatatcagaaaggacaaggtggcgaaacagacg
aaggaacgcgcgcagtacgtcaaacgggttatcgtgcacccttcattccacaatatatcc
ttcgcggaagctgagaaactcatggaaagcatggcgcagggtgaagtcatcatcagacct
agtagcaagggttccgaccatttgactgtgacatggaaggtggccgagggcatatgccag
cacatagatgtgcgagaagaggggaaagaaaatgcattctcattgggccgcagtctgtgg
atacaggggtcagagttcgaagatctcgacgaaatcatagccaggtacgtcacccctatg
gcgggtcacgctcgcgacctcatcgcatacaagtactacaagcccctgggcggcatgagg
gacaaggccgaagaatggctaaaagaagagaaggcgaaaaacgctaacaaaatccactac
atcatctccgccgccaagaaccaccccggcaggttcctcctctcgtatctccccaggaac
aaagtcacccacgaatacgtctcagtaactccagatgggtacaagttcaggcagaggatg
tttgactcgcttggcggtttgttgaaatggttcaaggagcacttccgggacccgccgccg
agtggaaccccggtccaacgaaccccggccttgcgaacccctcacggcggcatgacgtcg
accatgtaccacacgccggctcctcacacccccgccttccacacccccgcgcataccccg
ggaccggcctacatcaacacaccctacacaccttccgcacagactccgtacatgacaccg
tttgcgacgacgccgcggcaacccgacttcctcaccccagtcgtgccccgccacaaacaa
gtccccgtgtacacggagccgtcagactggcagaaggcggccgaggactgggtccgacat
agaactgttagagacacgccggcgacgccgcggagtagtgagggcatgtcgacgccgaga
caatcgaacaggaccccgcggcacgacatgcgatccactccgcggcacgaccggaccccg
cgacacgacgaccggacgccgcgacacgacgacagaacaccacggtacgacgaccgaacg
ccgcgacacgacgacagaacgccgcgacacgacgacagaacgccgcgtcacgacgacagg
acgccgcgacacgacagtaggaccccgcgacacgacagcaggacgccgcgacacgatggc
cggggctctcgctcgcattccgtcaggtctaccccccacaccaacacctcgcccagatca
atgtcgctcggagacgcgacaccgctctacgatgaaaattag
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