Leptidea sinapis (Wood White): 126979443
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Entry
126979443 CDS
T09272
Name
(RefSeq) collagen alpha-1(XVIII) chain-like
KO
K06823
collagen type XVIII alpha
Organism
lsin
Leptidea sinapis (Wood White)
Brite
KEGG Orthology (KO) [BR:
lsin00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lsin04147
]
126979443
00535 Proteoglycans [BR:
lsin00535
]
126979443
00536 Glycosaminoglycan binding proteins [BR:
lsin00536
]
126979443
Exosome [BR:
lsin04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
126979443
Proteoglycans [BR:
lsin00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
126979443
Glycosaminoglycan binding proteins [BR:
lsin00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
126979443
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
126979443
NCBI-ProteinID:
XP_050684714
LinkDB
All DBs
Position
1:6769368..7066868
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AA seq
913 aa
AA seq
DB search
MECIRWLWLILVGCTTASFANDGLFGGKFPNDIPEYDLLHAIGVPFSNPKTQYFDEGLDG
FPAYGLKPGSDIKSPYRLFMPEKLYAEFSITATVRPANKDGGFLFSVVNPLETVVQLGVQ
LIQSGPGLTNISLLYTDANAYALSQTIASFVVPSFAKKWTRFGLRVSMENVTLFLNCLEF
DSVLVKRNPTELVFDSASTLYVGQAGPLIKGAFHGAFQELKLYGSPTQAEIQCVNTFEDI
GKGSGGDEIDIDNFLVDQEEGDGEGSGRYGTIPPFPPPPPGLNGYAPILRGEKGERGPRG
PPGESIRGPPGPPGPPGPPGSSSTPTIIDSSGSGDDDVQISGVKQIFGENYVSLGQCGCN
TSVMLSLLETAPELRGPPGPPGLVGLEGRSGPPGIPGQVGPPGERGPMGPRGEKGDRGDE
GPRGAEGQPGSKGEPGVDGRPGSPGPPGAPGSSGSSDYINFDSNWKPRQIYKESLLGSYG
GAIGRPGAPGPKGDAGQPGPIGLQGERGFPGPKGERGQIGHTGLKGDRGYLGPKGDRGVK
GDRGTPGLDGRPGLPGANGRFGEKGEKGERGFPGPPGPPSVPSIFTTEDSEYITSGRMGT
NFRGDKGEKGEKGVRGNDGIPGLPGKDGNTGERGDIGPSGMPGVSGPPGATGLKGDRGER
GPPGPLSVVSAGSDILTIKGDKGEMGPRGRRGRPGPVGPRGPQGLQGIPGPPGKPGEKGD
IGPIGWMGRPGALGSPGDVGPVGPKGEKGDPGISILDASMFKGEKGDPGRDGAPGPQGIQ
GPPGLPAVSHKSDVLQYVPGPPGPPGPPGPPGSPGISITGPKGEPGQSFYEEPVHGSPKF
FGRPAHKSALDEIKALRELKELKDKNRDRNALFQETRNHHADEATPTKTVPGAAVYYTTE
EMLRVSFKNTKTI
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggagtgtattcgatggctgtggctgattcttgttggttgtacaacagcatccttcgca
aacgacggactttttggagggaaattccctaacgatataccggaatacgacctgctccac
gcgatcggcgttccatttagcaatccaaaaacgcaatacttcgacgaaggcctcgatgga
tttccggcttatggacttaagcccggatccgacataaaatctccgtatagactgtttatg
cctgagaagttgtacgccgaattctctatcactgcaactgtccgaccagcgaataaagat
ggcgggtttctcttctccgtcgtaaaccctttagaaactgtagtccaattgggagttcaa
ttgatacaatcgggacctggattgacaaatatatcattactttataccgatgctaatgct
tacgccttgtcgcaaactatcgcgtcattcgtcgtaccatcttttgctaagaaatggacg
aggtttgggctgagagtctcaatggaaaatgtgacgttgtttttaaattgtttagaattt
gattcagttttagtgaagaggaacccgactgaattagtctttgattcggcatcaactctg
tatgttggacaggcaggaccacttataaagggcgcgtttcacggtgcgtttcaagagctg
aaattatatggatctccaactcaagcggagatacagtgtgtcaatacatttgaagatatt
ggtaaaggcagcggtggagacgaaatagatattgacaattttttggttgaccaagaagaa
ggagatggggagggatctggtcgctatggaactattccgccatttccgccgccgcctcct
ggacttaacggttatgcaccaattttacggggagaaaaaggagaaagaggaccaaggggt
ccaccaggtgaatcgataaggggtccacctggacctccagggccacctggacctcctgga
tcatccagtacccctaccattatagactcttcaggatcgggcgatgatgacgtgcagata
tctggagttaagcaaatttttggcgaaaactatgtatcactgggtcaatgcggctgcaat
actagcgttatgctatcgctgctggagacagctcctgagctacgaggtcctcctgggcca
ccgggactcgtcggacttgaaggacggtcgggtcctcctggaataccaggacaagttgga
ccgcctggtgaacgaggtccaatggggccaaggggagagaagggcgatagaggcgacgaa
ggaccaaggggagctgaaggccaaccaggttctaaaggagagccaggtgttgacggtaga
cctggcagtcctggccctcctggggcgcctgggtcatctggatcctcagattacattaat
tttgattcaaactggaaacctagacaaatatataaggaatcactgctgggttcatacgga
ggtgcaatcggtagacctggagcgccagggcctaaaggagatgctggtcaacctggccct
ataggcctacaaggagaacgaggttttccaggaccaaagggagagcgaggtcaaattgga
cacacgggattaaaaggagatagaggctatcttggacctaaaggcgacagaggagtaaaa
ggagataggggaactccaggattagacggaagaccgggattacctggggccaatggccgc
ttcggtgaaaagggtgaaaaaggtgaacgaggttttccgggacctccgggacccccttca
gtaccaagtattttcacaacagaagattcagaatacataacgtcaggtcgcatgggaacg
aacttcagaggcgataaaggagagaagggtgaaaaaggcgttcgaggtaacgacggaatt
cctggactcccaggaaaggatggtaatacaggcgagcgtggagatataggaccatctgga
atgcctggagtctctgggccacctggagccactggtttgaaaggggatagaggagagaga
gggcctcctggtcctcttagcgttgtctctgccggatcagatatactaactattaaaggc
gataaaggcgaaatggggcccagaggccgccgaggacgtccgggtcccgttggtcctagg
ggacctcagggcttacaaggcattccgggtcctccagggaagcctggagagaaaggagac
atcggacctataggatggatgggacgtcctggtgctctgggatctccaggggatgttgga
cctgttggtcctaaaggtgaaaagggtgatcctggaatcagtattttggatgcttcaatg
tttaaaggagagaaaggtgatcctggaagagatggtgcaccaggccctcaaggtatccag
ggtcctcccggtcttcctgctgtctcgcacaagtctgatgtcctgcagtatgtgcccggg
ccacctggcccgccgggccccccagggcctcccggttctccaggaatatctattactgga
cccaaaggcgagccagggcaaagtttctatgaagaacccgtacatgggagcccaaaattc
tttggaagaccagcacacaaaagcgcactagatgagataaaagcattgagagaattgaaa
gaacttaaagacaaaaatagagatcgaaatgcactgtttcaagaaactcgaaatcatcat
gctgatgaggcgacacctacaaaaacagtacctggcgctgcagtctattacacgacggaa
gagatgttaagagtaagttttaagaatactaaaactatataa
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