Leptidea sinapis (Wood White): 126979593
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Entry
126979593 CDS
T09272
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
lsin
Leptidea sinapis (Wood White)
Pathway
lsin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126979593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsin03041
]
126979593
Enzymes [BR:
lsin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126979593
Spliceosome [BR:
lsin03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
126979593
Complex B
126979593
Complex C
U2 SnRNP specific factors
126979593
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-GeneID:
126979593
NCBI-ProteinID:
XP_050684922
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All DBs
Position
3:11453814..11480633
Genome browser
AA seq
749 aa
AA seq
DB search
MSYNSGGSSGKGLGFAGFTMPKRNPSNISLHAVPPPTAMNAVPPPNSGLSKQGYSTMNAI
TQNAVTGFTLGKKRAKTEDEYFDDDDEPPTPALAYIPAPGSPTYNMMNSRNEEEEEDPLD
AYMAGLEQQAAKDLKTSKENEASGKEDSGRGTRGDIDEMDDEESYYKYMEDNPLTAADDG
SDVEIEYDEDGNPLPPPKKKFIDPLPPIDHSEIEYEPFEKNFYTPHEEIEKLTHVQVEEL
KKNLGVKITGPEPPKPVSSFAHLCFDEQLMKAIRRSEYTQPTPVQAAGIPAALSGRDIIG
IARTGSGKTAAFIWPLLIHIMDQKEISPGDGPIGLILAPTRELAQQIYMETKRFGKVYNI
RCVCCYGGGSKWEQTKALEGGAEIIVGTPGRVIDLIKCKATNLKRVTYLVLDEADRMFDM
GFEPQVRSICNHVRPDRQALLFSATFPRRVEKLARDALHDPVRVQHGAAGEASQLVTQHV
RIFNKPEEKWSWLLQNLVEFLSAGSVLIFVTKKLEAEQTAANLGVQQYDALLLHGDMDQA
DRNQVITSFKRQEHNILVATDVAARGLDIPHIRTVINYTLARDIDTHTHRIGRTGRAGVP
GDAHTLLSRDKDKEFAGHLVRNLEGAQQEVPEDLMHLAMQSSWFRKSRFKKSKGKNLNVG
GCGLGYKERPGLPNVSEEPLVSAPSGPATDRLATLKQAFRSQYDKFTASSDHSWEQTRPA
LQPGVNAPAAELDNPPERVRKSGKKSRWE
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgagttataattcgggtgggagcagcggcaaaggacttggattcgctgggtttacgatg
ccaaaacgaaatccttccaatatttctttacatgctgtaccacctccgacggctatgaac
gctgtaccacctccgaattcagggttgtcgaagcaggggtattcaacaatgaatgccata
acccaaaatgctgtaactggctttacattaggaaagaaacgcgcaaaaacagaagatgaa
tattttgatgatgatgatgagccacccacaccagcacttgcatacattcctgcacctggc
agccctacatataacatgatgaattctaggaatgaagaagaagaagaagatcctctagat
gcatatatggcaggtcttgaacagcaggctgctaaggatttaaagaccagcaaagagaat
gaagccagtggtaaggaggacagtggcagagggacaagaggggacattgatgaaatggat
gatgaagagagctactataaatatatggaggataatccattgactgcagctgatgatggt
tcagatgtagaaatcgagtatgatgaagatggcaaccctctacctccaccaaagaaaaag
tttattgatccactaccaccaatcgaccattctgaaatagagtatgaaccatttgagaaa
aacttctacacccctcatgaggaaattgaaaagttaacacatgtgcaagttgaagaatta
aaaaagaatttaggtgttaagataacggggccagaaccaccaaaaccagtgagcagcttt
gctcacttgtgttttgatgaacaactgatgaaggcaatacgtcgctcagagtacacacag
cctactcccgtgcaggctgcaggcatcccagcagcactgtctggaagagacataattggt
attgcacggactgggtctggtaagacggcagcattcatctggccactcctcatccacatc
atggaccagaaggaaatatctccaggggatgggcccattggtctcatcttagcgccaaca
agagaactcgcacaacagatatacatggagacgaagagattcggcaaagtgtacaacatt
agatgtgtgtgttgctacgggggtggctctaagtgggaacagaccaaagcattagagggt
ggtgcagagataatagtggggactcctggcagagtcatcgacttgatcaaatgtaaagcc
accaacttgaagagagttacctacctggtccttgatgaggctgatagaatgtttgatatg
ggctttgagccccaagttcgatcaatatgcaaccacgtgaggccagaccgacaagcgctg
ctgttctctgcgacgtttccgcgccgcgtggagaagctggcccgtgatgccttgcacgac
cccgtgcgagtgcagcacggggccgcgggtgaggcgagccagctggtgacacagcacgtc
aggatattcaacaagccggaagaaaaatggtcgtggctgttacagaacttggtcgagttt
ctttctgcgggaagtgttctcatatttgtaaccaaaaagctcgaggctgaacagacggca
gcgaatcttggcgtacaacaatacgacgctctgttattgcacggtgacatggatcaagct
gacaggaaccaggtgatcacttccttcaagcgacaagaacataatatactcgtcgcaact
gatgttgcagctcgcgggctggacattcctcacattcgcaccgtcatcaactacacgctc
gcgcgagacattgacacgcacacgcaccgcatcggccgcacgggccgcgccggcgtgccc
ggagacgcgcacactctcctctccagggacaaggacaaggagttcgccggacatttggtg
cgcaacctggagggagcgcagcaggaagtaccagaggatctgatgcacttggcgatgcag
tcctcgtggttccgcaagtccaggttcaagaaaagcaaggggaagaaccttaatgttggt
ggttgcggtcttgggtataaggagcgaccaggtttacctaacgtgagcgaggagccgctc
gtaagcgcgccgagcgggccagccacggatcgactcgccacgctcaaacaggccttccgg
tcgcagtatgacaagtttacagcatcctcggaccactcatgggagcaaacgagacctgcc
cttcagcccggggtgaacgcgcccgccgcagagctagacaatccaccggaaagagtacga
aagagtggcaagaaaagtcgttgggagtag
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