Leptidea sinapis (Wood White): 126979601
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Entry
126979601 CDS
T09272
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
lsin
Leptidea sinapis (Wood White)
Pathway
lsin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126979601
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsin03041
]
126979601
Spliceosome [BR:
lsin03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
126979601
Complex C
U5 SnRNP specific factors
126979601
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
126979601
NCBI-ProteinID:
XP_050684930
LinkDB
All DBs
Position
3:8553044..8594418
Genome browser
AA seq
2364 aa
AA seq
DB search
MSLPPYLLGPNPWATMMAQQQLAAAQQAALQAHAAAAAAAPPVPPAQPPKPHHIPEEKIK
EKSQKWLQLQSKRFAEKRKFGFVDAQKEDMPPEHIRKIIRDHGDMTSRKYRHDKRVYLGA
LKYMPHAVMKLLENMPMPWEQIRDVKVLYHITGAITFVNEIPWVIEPVYIAQWGTMWIMM
RREKRDRRHFKRMRFPPFDDEEPPLDYADNILDVEPLEPIQIEMDPDEDAAVASWFYDHK
PLLGTKHVNGSTYRKWNLSLPQMATLYRLANQLLTDLVDDNYFYLFDSKSFFTAKALNMA
IPGGPKFEPLVKDSSAGDEDWNEFNDINKIIIRQAIRTEYRIAFPYLYNNLPHFVQLSWY
HTPNVVYIKTEDPDLPAFYFDPLINPISHRHTVKSLDPVPDEEEFVLPEEVSPFLQERAL
YTDNTANGIALLWAPRPFNMRSGRCRRAIDVPLVKTWYKEHCPPGQPVKVRVSYQKLLKY
YVLNALKHRPPKPQKKRYLFRSFKSTKFFQTTTLDWVEAGLQVCRQGYNMLNLLIHRKNL
NYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLIVDSHVQYRLNNVDSFQ
LADGLQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVSKGPGCGFWAPG
WRVWLFFMRGITPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHFDLELRASVMHDI
VDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPTPIENMILRYVKMKADWWTNT
AHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYISPEEAVAIYTTT
VHWLESRRFAPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDN
PHEALSRIKRHLLTQRTFREVGIEFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKR
RLLPPWVKPADTEPSPLLVYKWCQGINNLQDVWEAGEGECNVLLESRFEKLYEKIDLTLL
NRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGVTRGLQFASFVVQYYGLVLDLLVL
GLSRAADMAGPPQLPNDFLAFQDRAVERAHPVRLYCRYVDRIHIYFRFTAEEARDLIQRY
LTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTIQWENS
FVSVYSKDNPNLLFNMAGFECRILPKCRSQNEELSHRDGVWNLQNEVTKERTAQCYLRVD
DESLARFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCEN
KIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHF
RSGMSHDEDQLIPNLYRYIQPWEAEFVDSQRVWAEYALKRQEANAQNRRLTLEDLEDSWD
RGIPRINTLFQKDRHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTD
MIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRR
FTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESIVMDL
CQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFSAYKWNVSRPSLLADTKDTMD
NTTTQKYWLDIQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGLLVAIDLAYNLHS
AYGNWFPGCKPLIQQAMAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFS
NQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRL
GQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPF
QACLKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNTERTKVL
LKPDKTTLTEPHHIWPTLTDDDWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILG
MEISAPSAQRQQIAEIEKQSKEQSQLTATTTRTVNKHGDEIITSTTSNYESQTFSSKTEW
RVRAISATNLHLRTNHIYVSSDDIKESGYTYILPKNLLKKFVTISDLRAQIACYLYGTSP
ADNPQVREVVCAVLPPQWGTHQAVHLPRHLPRHPALAHLQPLGWMHTQPNELPQLSPQDI
TTHAKIMAENPTWDGEKTIIITCSFTPGSCSLTAYKLTPSGYEWGVKNTDRGNNPKGYLP
SHYEKVQMLLSDRFLGYFMVPSQGSWNYNFMGVRHDPNMKYGVQLCNPREFYHEVHRPAH
FMNFAAMEDASATIIAADREDHYA
NT seq
7095 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgccgccgtacttgctggggcctaacccatgggcaaccatgatggcacagcaa
caattggcggcggctcaacaggctgcgctgcaagcacacgccgcagctgccgccgccgcg
ccgccagtaccgccggcacaacctccaaaaccccatcatattccggaggaaaaaatcaaa
gaaaagtctcaaaaatggctacagcttcaatcgaaacggttcgccgaaaaacggaagttt
ggtttcgtcgatgcacaaaaagaagatatgccgcccgaacatatacgaaaaattatcagg
gatcatggcgatatgaccagtcgtaaatacagacatgacaagcgagtttatctgggggcc
ttaaagtatatgcctcatgctgtaatgaaactcctggagaacatgccaatgccatgggaa
caaataagagatgttaaagtgttgtatcatattacgggagcgataacattcgttaatgaa
ataccctgggtcatagagcctgtgtatatagcccaatggggaacaatgtggattatgatg
cgtcgtgaaaaaagagaccgtagacactttaaaaggatgaggttcccaccttttgatgat
gaggagccccctcttgattatgcagataacatattagatgttgaaccactagaaccaatt
caaatagaaatggatcctgatgaagatgcagcagttgcctcatggttctatgaccacaaa
ccactcctgggtaccaaacatgttaacggatcaacatatagaaaatggaatttgtctttg
ccgcagatggcaacattgtatcgactcgctaaccaattgcttactgatttagttgacgac
aactatttctatttgtttgactccaagagtttcttcactgctaaagcactcaatatggca
attccgggtgggcctaaatttgagcccctggtgaaagatagttcagcaggcgatgaggac
tggaatgaattcaatgatattaataaaattattattcgccaggctattagaaccgagtat
aggattgcttttccgtatctgtacaacaatctaccacactttgttcagctatcttggtac
cacacaccaaatgttgtttacatcaaaacagaagacccagacctacctgcattttatttt
gacccactaataaacccaatttctcatcggcatacagtgaagtccttagaccctgtgcca
gatgaggaagagtttgtacttcccgaagaagtgtcaccatttttgcaggaacgggcccta
tacacagacaatactgcaaatggtattgcattgctgtgggcaccaagacctttcaatatg
agatcaggtcgttgtcgtcgcgcaattgatgtgccgttggtgaagacgtggtacaaggag
cattgtcccccgggtcagccggtcaaagtgcgtgtatcttaccagaagctgctcaaatat
tatgttttgaatgcactgaaacacagaccgcccaagccacagaagaagaggtacctattc
cgatcattcaagtcaacaaagtttttccaaaccacaacacttgattgggtagaggctggt
ctccaagtttgtaggcaaggctacaatatgttaaacctactcatacatagaaagaacctc
aactaccttcatctggattataacttcaatttgaaaccggtcaagacactgacaacgaag
gaacgtaagaaatcgaggtttggtaatgcattccatttgtgtcgtgaaatactccggctg
actaagctaatagtggactcacatgtgcaatatcgtcttaacaatgtggattcgttccaa
ttggctgatggcttgcagtacatatttgctcatgtgggacagctcacaggaatgtacaga
tacaagtacaaactcatgaggcagatcagaatgtgcaaggatctgaaacatctcatctac
tacagattcaataccggtccagtatccaaaggccctggctgtggtttctgggcaccaggc
tggcgcgtgtggttgttcttcatgagggggatcactccactgcttgagaggtggctcgga
aacttgctatccaggcaatttgagggacgacattctaaaggtgttgcaaagaccgtgacg
aaacagcgtgtcgagtctcacttcgacctcgaactgcgcgcgtcagtgatgcacgacatt
gtcgacatgatgcccgagggtatcaagcagaacaaagccaggactatcctgcaacatctg
tctgaagcatggagatgctggaaggcgaatataccttggaaggtaccaggtctgcccaca
ccaatagaaaacatgattctccggtatgtgaaaatgaaagcagactggtggaccaacaca
gctcattataaccgagagagaatacgtcgcggtgccaccgtcgacaaaactgtgtgcaag
aagaaccttggtagactgacgaggctttaccttaaagctgaacaagagagacagcacaat
tatctaaaggatggaccatacatttcacctgaagaagctgttgccatctacacaacaaca
gtccattggctagagtctcgacgcttcgcccccattcccttccctccactgtcatacaaa
cacgacaccaagttgcttatcctagcgctggagagactcaaggaggcgtacagtgtgaag
tcgaggttgaaccagagtcagagagaagagctcggactcattgaacaggcttatgacaat
cctcatgaagccttgtccagaatcaaacgacatttgctcacacagagaactttcagagag
gtgggcatagaatttatggacctatactctcaccttgtccccgtgtacgacgtggagccc
ctggagaagataacagatgcatacctcgaccagtacttgtggtacgaggctgacaagcgg
cgcctgctgccgccctgggttaaacccgccgacacggagccgtcgccgctgctcgtctac
aaatggtgtcaaggtatcaacaacctgcaggacgtgtgggaggcgggcgaaggtgagtgc
aacgtgctgctggagtcgcgcttcgagaagctgtacgagaagatcgacctcacgctgctg
aacagactgctgcggctgatagtggaccacaacatagctgactacatgactgccaagaac
aacgtcgtcatcaactacaaggacatgaaccacaccaactcgtacggcgtgacccgcggg
ctgcagttcgcgtcgttcgtggtgcagtactacgggctggtgctggacctgctggtgctg
ggtctctctcgcgccgccgacatggccggcccgccgcagctgcccaacgacttcctggcc
ttccaggaccgcgccgtggagcgcgcgcaccccgtgcgcctctactgccgctacgtcgac
cggatccacatatacttccgattcacagcagaagaggctcgtgaccttatacaacgttat
ctgacagagcacccagaccccaacaatgagaacattgtgggatacaacaacaagaagtgc
tggccccgagacgctcggatgagactcatgaagcatgatgttaatctaggacgcgccgtg
ttctgggatatcaagaaccgtctgccgcggtcggtgacgacgatccagtgggagaatagc
ttcgtgtctgtttattcaaaggataaccccaacctgcttttcaacatggccggttttgaa
tgcagaattttacctaaatgtcgaagtcaaaatgaagagttgtcacaccgagatggagta
tggaatctgcagaatgaagtaacaaaggagagaacagcccagtgctaccttcgggttgat
gacgagtctctcgcgcgcttccacaacagagtgcggcagatactcatggcctctggctcg
acaacatttactaagattgtcaataaatggaacacagctcttatagggttgatgacttac
ttccgtgaagccgtagtcaacacccaggagctattggacttgctcgttaagtgtgagaac
aaaattcaaacaagaatcaagatcggcctcaactcgaagatgccctcgcgtttcccgccg
gtggtgttctacacgcccaaggaactcggcggcttgggaatgttgtctatgggacatgtt
cttataccacagtcggatctgcgatggtcgaaacaaacagacgtgggcatcacacacttc
cggtcgggcatgtcgcacgacgaggaccaactgatccccaatctgtaccgctacattcag
ccgtgggaggcagagtttgtagactctcagcgcgtctgggccgagtacgcgctcaagcgg
caggaggccaacgctcagaatagacgtttaacattggaagacttggaggactcatgggac
agaggtatcccaagaattaacaccctgttccaaaaagacaggcacacacttgcctatgat
aaaggctggcgaattcgtaccgagttcaaacaatatcaggtactgaagcagaatccattc
tggtggacacatcagcgccacgacggcaagctgtggaatctcaataactacagaacagac
atgattcaggcactgggtggagtcgagggtatactggaacacacattattcaagggaaca
tacttccccacttgggaggggttgttctgggagaaagcatctggttttgaagagtcaatg
aagtacaaaaaactgacaaacgcgcagcgatccggtctgaaccagatccccaaccgacga
tttaccctgtggtggtcccctaccatcaacagagccaatgtatatgttggtttccaggta
caattggatttgactggaatcttcatgcacggcaagatcccaacactgaagatatctctg
atccaaatattcagagctcacttgtggcagaaggttcacgaatctattgtgatggacctg
tgtcaggtgttcgaccaagagctggacgcgctggagatagagacagtgcagaaggagacc
atccacccgcggaagtcgtacaagatgaactcgtcgtgtgcggacatactgctgttctcc
gcgtacaagtggaacgtgtcgcgaccctcgctgctggctgacaccaaagacacgatggac
aacacgaccacccagaagtactggctggacatccagctgcgctggggcgactacgactcg
cacgacatcgagcggtacgcgcgtgccaagttcctggactataccaccgacaacatgtcc
atctacccctcgcccacgggtctgctggtcgccatcgacctggcctacaacctgcacagt
gcatacggaaactggttcccgggctgcaagccgctgatccaacaggccatggcgaagata
atgaaagctaatcccgcgctgtacgtgttgagggaaagaattcgtaaagcactgcaactg
tactcgtccgaacctaccgagccttatctatccagtcagaactatggcgaactgttctca
aatcaaattatttggtttgtggatgatacgaacgtataccgcgtgacaatacacaagacg
ttcgaaggcaatctaaccacaaagcccatcaatggtgccatcttcatattcaacccgagg
accggacagctgttcttgaagatcatccacaccagcgtgtgggccggacagaaacgtctt
ggacagcttgctaaatggaaaacagctgaagaagtagctgctcttattcgttcactgcca
gtggaggagcagcctaaacagattattgtcaccagaaaaggaatgttggacccacttgag
gttcacttgctcgacttcccgaacatagttatcaaagggtcggagttgcaactgccgttc
caggcttgcctcaaggtggagaagttcggtgacttgattctcaaagccacagagccgcag
atggtgctcttcaacttgtacgacgactggctcaagactatatcttcctacaccgcgttc
agtcgtctgatactgatactgcgcgcgctacacgtgaacacagaacgtaccaaggtgctg
ctgaagcccgataagactacgctgacagaaccgcatcatatttggccaactcttactgat
gatgactggatcaaggtcgaggtgcaactcaaagatcttattttggctgattatggcaag
aaaaacaacgtgaatgttgcctctctaacacaatcggagattcgcgacatcatcctgggt
atggagatatcggcgccgtcggcccagcggcagcagatcgcggagatagagaagcagagc
aaggagcagagccagctcacagcgacgaccacgcggacggtcaacaagcacggagacgag
atcatcacttctaccaccagcaactatgagtcgcagaccttcagttcaaaaacagaatgg
cgtgtgcgtgcaatatccgcgacgaatctccacctgcgcacaaaccacatctacgtcagc
tcggacgatatcaaggagagtggatatacttacattctgccaaagaatttgctcaagaag
tttgtcactatatctgacttgagagcgcagatcgcgtgctacctgtacggcacgtcgccg
gccgacaacccgcaggtgcgcgaggtggtgtgcgccgtgctgccgccgcagtggggcacg
caccaggccgtgcacctgccgcgccacctgccgcgccaccccgcgctcgcacacctgcag
ccgctgggctggatgcacacgcagcccaacgagctgccccagctctcgcctcaggacata
acaacccatgcgaaaataatggctgagaatccaacatgggatggggagaaaaccataatt
ataacgtgctcgttcacgcccggctcctgttccctaaccgcgtacaaactgacgcccagc
ggctacgagtggggcgtgaagaacacagaccgcggcaataaccccaagggatacctaccc
agccactacgagaaggtgcagatgttgctgtcagatagattccttgggtactttatggtg
ccttcccaaggcagctggaattataactttatgggtgtccgtcacgaccccaacatgaag
tatggcgtgcagctgtgcaatccccgtgagttctaccatgaggtgcaccggcccgcccac
ttcatgaacttcgctgccatggaggacgcctctgccaccattatcgctgcagaccgagag
gaccactatgcctga
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integrated database retrieval system
